RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 ST3GAL4Q11206 333 aa24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 ETFDHQ16134 617 aa24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 ZC3HAV1Q7Z2W4 902 aaKnown RBP24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 NUFIP2Q7Z417 695 aaKnown RBP24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 POMGNT2Q8NAT1 580 aa24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 KISS1RQ969F8 398 aaPredicted RBP24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 NMD3Q96D46 503 aaKnown RBP24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 LGALS12Q96DT0 336 aa24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 ZFP3Q96NJ6 502 aa24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 RHNO1Q9BSD3 238 aa24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 DUSP21Q9H596 190 aa24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 C12orf49Q9H741 205 aa24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 MRPS18AQ9NVS2 196 aaKnown RBP24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 UPB1Q9UBR1 384 aa24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 TINAGQ9UJW2 476 aa24.27■■□□□ 1.48
CTDNEP1-201ENST00000318988 RGS10O43665 173 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 TIMP3P35625 211 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 ZNF84P51523 738 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 LRFN4Q6PJG9 635 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 SLC25A47Q6Q0C1 308 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 GLB1L2Q8IW92 636 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 UBE2J2Q8N2K1 259 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 TSPAN14Q8NG11 270 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 ZNRF4Q8WWF5 429 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 CNN2Q99439 309 aaKnown RBP24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 LINC00470Q9BZP3 86 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 SH3BGRL2Q9UJC5 107 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 PCDHGB1Q9Y5G3 927 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 SNX5Q9Y5X3 404 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 GTF3C1Q12789 2109 aa24.26■■□□□ 1.47
CTDNEP1-201ENST00000318988 A0A1W2PPL8 197 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 UPK3AO75631 287 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 APOL3O95236 402 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 CRHP06850 196 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 TMIGD3P0DMS9 266 aaPredicted RBP24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 RIPPLY2Q5TAB7 128 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 LINC01590Q5TEZ4 76 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 TMEM80Q96HE8 168 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 RBM24Q9BX46 236 aaKnown RBP24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 FKBP14Q9NWM8 211 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 PAK1IP1Q9NWT1 392 aaPredicted RBP24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 ERVK-18Q9QC07 812 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 IGKV1D-43A0A0B4J1Z2 117 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 DHHO43323 396 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 RAB36O95755 333 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 STSP08842 583 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 MRPL3P09001 348 aaKnown RBP24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 GGTLC2Q14390 218 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 PHYHD1Q5SRE7 291 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 TSPO2Q5TGU0 170 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 SEM1Q6ZVN7 128 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 ZNF511Q8NB15 262 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 OR52I1Q8NGK6 324 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 OR6K3Q8NGY3 331 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 FOXN4Q96NZ1 517 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 TTYH2Q9BSA4 534 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 SEC61A2Q9H9S3 476 aa24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 EXOGQ9Y2C4 368 aaKnown RBP24.25■■□□□ 1.47
CTDNEP1-201ENST00000318988 ALPK2Q86TB3 2170 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 IGHV3-9P01782 118 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 CDK1P06493 297 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 LAP3P28838 519 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 CDH15P55291 814 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 C10orf128Q5T292 105 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 SHFQ7M4L6 423 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 ABHD12BQ7Z5M8 362 aaPredicted RBP24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 ERI1Q8IV48 349 aaKnown RBP24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 OR4F15Q8NGB8 312 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 ALKBH3Q96Q83 286 aaPredicted RBP24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 CRLF2Q9HC73 371 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 CHCHD3Q9NX63 227 aaKnown RBP24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 COMMD3-BMI1R4GMX3 469 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 CACNA1BQ00975 2339 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 ATRXP46100 2492 aa24.24■■□□□ 1.47
CTDNEP1-201ENST00000318988 A0A087WXM4 84 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 TRGV8A0A0C4DH27 118 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 TVP23AA6NH52 213 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 EIF4E1BA6NMX2 242 aaKnown RBP24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 ZNF587BE7ETH6 402 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 MRPS14O60783 128 aaKnown RBP24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 SBK2P0C263 348 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 GLI4P10075 376 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 ZNF823P16415 610 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 DCKP27707 260 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 NAA10P41227 235 aaPredicted RBP24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 OR3A2P47893 321 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 ZNF133P52736 654 aaPredicted RBP24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 HSF2Q03933 536 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 PIGFQ07326 219 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 GUSBP1Q15486 140 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 ZSCAN2Q7Z7L9 614 aaPredicted RBP24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 RPRMLQ8N4K4 120 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 OR10H5Q8NGA6 315 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 SGCDQ92629 289 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 INTS14Q96SY0 518 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 ADGRL4Q9HBW9 690 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 FGF20Q9NP95 211 aaPredicted RBP24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 SLC7A10Q9NS82 523 aa24.23■■□□□ 1.47
CTDNEP1-201ENST00000318988 TRIM64A6NGJ6 449 aa24.22■■□□□ 1.47
CTDNEP1-201ENST00000318988 GPANK1O95872 356 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms