RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 LRRC18Q8N456 261 aa16.79■□□□□ 0.28
LIME1-201ENST00000309546 LZICQ8WZA0 190 aa16.79■□□□□ 0.28
LIME1-201ENST00000309546 SNX18Q96RF0 628 aa16.79■□□□□ 0.28
LIME1-201ENST00000309546 CMTM6Q9NX76 183 aa16.79■□□□□ 0.28
LIME1-201ENST00000309546 MYEF2Q9P2K5 600 aaKnown RBP16.79■□□□□ 0.28
LIME1-201ENST00000309546 DUSP13Q9UII6 198 aa16.79■□□□□ 0.28
LIME1-201ENST00000309546 SLC22A2O15244 555 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 SLC2A10O95528 541 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 TGFAP01135 160 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 IFI30P13284 250 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 IFNA8P32881 189 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 CHN2P52757 468 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 SEC24CP53992 1094 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 SELENOWP63302 87 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 CD47Q08722 323 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 ST3GAL3Q11203 375 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 HIST3H3Q16695 136 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 ALKBH6Q3KRA9 238 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 RGS7BPQ6MZT1 257 aaPredicted RBP16.78■□□□□ 0.28
LIME1-201ENST00000309546 ARPINQ7Z6K5 226 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 PAQR4Q8N4S7 273 aaPredicted RBP16.78■□□□□ 0.28
LIME1-201ENST00000309546 RBM15BQ8NDT2 890 aaKnown RBP16.78■□□□□ 0.28
LIME1-201ENST00000309546 SOX7Q9BT81 388 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 MRPL13Q9BYD1 178 aaKnown RBP16.78■□□□□ 0.28
LIME1-201ENST00000309546 CCDC134Q9H6E4 229 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 STX18Q9P2W9 335 aaKnown RBP16.78■□□□□ 0.28
LIME1-201ENST00000309546 RHCGQ9UBD6 479 aa16.78■□□□□ 0.28
LIME1-201ENST00000309546 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.78■□□□□ 0.285e-7■■□□□ 14.4
LIME1-201ENST00000309546 CENPBD1B2RD01 187 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 ZNF682O95780 498 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 IGF2P01344 180 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 APEX1P27695 318 aaKnown RBP16.77■□□□□ 0.28
LIME1-201ENST00000309546 PLP2Q04941 152 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 FMODQ06828 376 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 LAPTM4AQ15012 233 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 TRIP10Q15642 601 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 TBC1D28Q2M2D7 210 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 ALG10Q5BKT4 473 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 ARMC4Q5T2S8 1044 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 VTCN1Q7Z7D3 282 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 DPPA2Q7Z7J5 298 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 ICA1LQ8NDH6 482 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 RP9Q8TA86 221 aaKnown RBP16.77■□□□□ 0.28
LIME1-201ENST00000309546 LIPHQ8WWY8 451 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 NSMAFQ92636 917 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 HDAC2Q92769 488 aaKnown RBP16.77■□□□□ 0.28
LIME1-201ENST00000309546 SEPHS2Q99611 448 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 MS4A5Q9H3V2 200 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 C1orf198Q9H425 327 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 A4GNTQ9UNA3 340 aa16.77■□□□□ 0.28
LIME1-201ENST00000309546 FBN1P35555 2871 aaKnown RBP16.76■□□□□ 0.27
LIME1-201ENST00000309546 ATRQ13535 2644 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 IQCMA0A1B0GVH7 501 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 SLC22A23A1A5C7 686 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 GSTA4O15217 222 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 LCKP06239 509 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 SAGP10523 405 aaPredicted RBP16.76■□□□□ 0.27
LIME1-201ENST00000309546 NAT2P11245 290 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 COX4I1P13073 169 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 IL2RGP31785 369 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 CDAP32320 146 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 HSF2Q03933 536 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 LIPEQ05469 1076 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 NKPD1Q17RQ9 610 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 NRN1LQ496H8 165 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 FAM120AOSQ5T036 256 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 C10orf128Q5T292 105 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 IGFN1Q86VF2 1251 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 MEX3DQ86XN8 651 aaKnown RBP16.76■□□□□ 0.27
LIME1-201ENST00000309546 SPATA3Q8NHX4 192 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 BPIFA2Q96DR5 249 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 FNDC11Q9BVV2 318 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 LRMDAQ9H2I8 198 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 KCNN2Q9H2S1 579 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 TXNIPQ9H3M7 391 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 CCNB1IP1Q9NPC3 277 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 HIF3AQ9Y2N7 669 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 AP3M1Q9Y2T2 418 aa16.76■□□□□ 0.27
LIME1-201ENST00000309546 J3KTA2 159 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 PHF1O43189 567 aaPredicted RBP16.75■□□□□ 0.27
LIME1-201ENST00000309546 LILRA1O75019 489 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 PTHP01270 115 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 HPXP02790 462 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 IFNW1P05000 195 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 TACSTD2P09758 323 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 SRD5A1P18405 259 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 HNF1AP20823 631 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 SLC7A2P52569 658 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 ERVS71-1P61550 626 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 RIN1Q13671 783 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 CCNIQ14094 377 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 NRMQ8IXM6 262 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 SLC15A3Q8IY34 581 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 OR1J2Q8NGS2 313 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 ZNF346Q9UL40 294 aaKnown RBP16.75■□□□□ 0.27
LIME1-201ENST00000309546 SNX13Q9Y5W8 968 aa16.75■□□□□ 0.27
LIME1-201ENST00000309546 IGKV1D-43A0A0B4J1Z2 117 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 NPIPB13A6NJU9 1138 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 NPIPB4C9JG80 1138 aa16.74■□□□□ 0.27
LIME1-201ENST00000309546 CXCR6O00574 342 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms