RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RPL3LQ92901 407 aaKnown RBP12.56□□□□□ -0.4
SS18-201ENST00000269137 ABTB1Q969K4 478 aaPredicted RBP12.56□□□□□ -0.4
SS18-201ENST00000269137 WDR76Q9H967 626 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 TRIM36Q9NQ86 728 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 PAQR5Q9NXK6 330 aaPredicted RBP12.56□□□□□ -0.4
SS18-201ENST00000269137 ZMIZ1Q9ULJ6 1067 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 TMEM14AQ9Y6G1 99 aa12.56□□□□□ -0.4
SS18-201ENST00000269137 A0A1W2PPW3 197 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 NR2C1P13056 603 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 PSMA1P25786 263 aaKnown RBP12.55□□□□□ -0.4
SS18-201ENST00000269137 EIF2S3P41091 472 aaKnown RBP12.55□□□□□ -0.4
SS18-201ENST00000269137 CLDN17P56750 224 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 OR12D2P58182 307 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 CLRN1P58418 232 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 CAMK2DQ13557 499 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 VASNQ6EMK4 673 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 VASH1Q7L8A9 365 aaPredicted RBP12.55□□□□□ -0.4
SS18-201ENST00000269137 KLBQ86Z14 1044 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 RFLNBQ8N5W9 214 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 ZIC4Q8N9L1 334 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 NEIL3Q8TAT5 605 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 C4orf36Q96KX1 117 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 OR51E2Q9H255 320 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 MRPL22Q9NWU5 206 aaKnown RBP12.55□□□□□ -0.4
SS18-201ENST00000269137 KLHL9Q9P2J3 617 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 COA3Q9Y2R0 106 aaPredicted RBP12.55□□□□□ -0.4
SS18-201ENST00000269137 ZNF716A6NP11 495 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 J3QLW9 94 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 ZNF432O94892 652 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 HRGP04196 525 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 ZNF19P17023 458 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 ALOX5APP20292 161 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 CRYBB2P43320 205 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 TAS2R43P59537 309 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 RPS3AP61247 264 aaKnown RBP12.55□□□□□ -0.4
SS18-201ENST00000269137 NCS1P62166 190 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 FMODQ06828 376 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 SPCS2Q15005 226 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 ZNF684Q5T5D7 378 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 KCTD20Q7Z5Y7 419 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 SLC26A10Q8NG04 563 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 OR6N2Q8NGY6 317 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 OTOSQ8NHW6 89 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 SNX33Q8WV41 574 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 CCDC86Q9H6F5 360 aaKnown RBP12.55□□□□□ -0.4
SS18-201ENST00000269137 STUB1Q9UNE7 303 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 SF3B6Q9Y3B4 125 aaKnown RBP12.55□□□□□ -0.4
SS18-201ENST00000269137 CACNA1CQ13936 2221 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 CACNA1GO43497 2377 aa12.55□□□□□ -0.4
SS18-201ENST00000269137 FRYQ5TBA9 3013 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 TRGV5A0A0B4J1U4 118 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 IGKV1D-43A0A0B4J1Z2 117 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 ZNF593O00488 134 aaPredicted RBP12.54□□□□□ -0.4
SS18-201ENST00000269137 PHYHO14832 338 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 CYTIPO60759 359 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 GPX5O75715 221 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 GPANK1O95872 356 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 IGHG3P01860 377 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 HLA-DQA2P01906 255 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 ITGB2P05107 769 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 GAAP10253 952 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 CD53P19397 219 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 GABRA5P31644 462 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 ZNF133P52736 654 aaPredicted RBP12.54□□□□□ -0.4
SS18-201ENST00000269137 VBP1P61758 197 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 LSM3P62310 102 aaKnown RBP12.54□□□□□ -0.4
SS18-201ENST00000269137 PCK2Q16822 640 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 TEX30Q5JUR7 227 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 SLC25A47Q6Q0C1 308 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 DPY19L4Q7Z388 723 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 ZNF385AQ96PM9 386 aaKnown RBP12.54□□□□□ -0.4
SS18-201ENST00000269137 OR2M2Q96R28 347 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 CHCHD6Q9BRQ6 235 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 DEFB127Q9H1M4 99 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 LAMP5Q9UJQ1 280 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 RCE1Q9Y256 329 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 LIPGQ9Y5X9 500 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 FLVCR1Q9Y5Y0 555 aa12.54□□□□□ -0.4
SS18-201ENST00000269137 TNRC6AQ8NDV7 1962 aaKnown RBP12.54□□□□□ -0.4
SS18-201ENST00000269137 RRP8O43159 456 aaKnown RBP12.53□□□□□ -0.4
SS18-201ENST00000269137 SULT1C4O75897 302 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 CPN1P15169 458 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 ZNF24P17028 368 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 CELP19835 753 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 UGT2B10P36537 528 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 ENTPD1P49961 510 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 EGR3Q06889 387 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 PLEKHG7Q6ZR37 379 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 FCRLAQ7L513 359 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 GLB1L2Q8IW92 636 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 TMEM123Q8N131 208 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 ZNF454Q8N9F8 522 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 ROBO4Q8WZ75 1007 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 TMEM54Q969K7 222 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 MCHR2Q969V1 340 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 INTS12Q96CB8 462 aaKnown RBP12.53□□□□□ -0.4
SS18-201ENST00000269137 PELI1Q96FA3 418 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 ZNF845Q96IR2 970 aaPredicted RBP12.53□□□□□ -0.4
SS18-201ENST00000269137 DCUN1D5Q9BTE7 237 aa12.53□□□□□ -0.4
SS18-201ENST00000269137 LDAHQ9H6V9 325 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms