RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 BPIFCQ8NFQ6 507 aa11.23□□□□□ -0.61
NUP88-201ENST00000225696 WNT2BQ93097 391 aa11.23□□□□□ -0.61
NUP88-201ENST00000225696 MRPL48Q96GC5 212 aaKnown RBP11.23□□□□□ -0.61
NUP88-201ENST00000225696 SEC22AQ96IW7 307 aa11.23□□□□□ -0.61
NUP88-201ENST00000225696 PAWRQ96IZ0 340 aaKnown RBP11.23□□□□□ -0.61
NUP88-201ENST00000225696 TSPAN32Q96QS1 320 aa11.23□□□□□ -0.61
NUP88-201ENST00000225696 GPX7Q96SL4 187 aaPredicted RBP11.23□□□□□ -0.61
NUP88-201ENST00000225696 RPP25Q9BUL9 199 aaKnown RBP11.23□□□□□ -0.61
NUP88-201ENST00000225696 SYT4Q9H2B2 425 aa11.23□□□□□ -0.61
NUP88-201ENST00000225696 SPACA6W5XKT8 324 aa11.23□□□□□ -0.61
NUP88-201ENST00000225696 A0A0A6YYC8 382 aaPredicted RBP11.22□□□□□ -0.61
NUP88-201ENST00000225696 RFPL4AA6NLU0 287 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 RFPL4AL1F8VTS6 287 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 I3L1I5 382 aaPredicted RBP11.22□□□□□ -0.61
NUP88-201ENST00000225696 AQP8O94778 261 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 ITGB2P05107 769 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 PRSS3P35030 304 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 CCR4P51679 360 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 RPL18Q07020 188 aaKnown RBP11.22□□□□□ -0.61
NUP88-201ENST00000225696 ATXN7L3Q14CW9 347 aaPredicted RBP11.22□□□□□ -0.61
NUP88-201ENST00000225696 ZNHIT3Q15649 155 aaPredicted RBP11.22□□□□□ -0.61
NUP88-201ENST00000225696 ZNF776Q68DI1 518 aaPredicted RBP11.22□□□□□ -0.61
NUP88-201ENST00000225696 GABRG1Q8N1C3 465 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 OR1J2Q8NGS2 313 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 C16orf52Q8NHV5 167 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 GPR148Q8TDV2 347 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 FAM3DQ96BQ1 224 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 BMFQ96LC9 184 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 MRI1Q9BV20 369 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 TWSG1Q9GZX9 223 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 ATG5Q9H1Y0 275 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 GLS2Q9UI32 602 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 HIF3AQ9Y2N7 669 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 NUP210LQ5VU65 1888 aa11.22□□□□□ -0.61
NUP88-201ENST00000225696 ELOA3DA6NLF2 546 aaPredicted RBP11.21□□□□□ -0.61
NUP88-201ENST00000225696 EFCAB7A8K855 629 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 K7EQS6 105 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 APBB3O95704 486 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 SDHAP31040 664 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 GRK6P43250 576 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 LUMP51884 338 aaPredicted RBP11.21□□□□□ -0.61
NUP88-201ENST00000225696 AKR1C2P52895 323 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 LBX1P52954 281 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 SLC25A1P53007 311 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 GMFBP60983 142 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 AKR1C1Q04828 323 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 ZNF169Q14929 603 aaPredicted RBP11.21□□□□□ -0.61
NUP88-201ENST00000225696 ISXQ2M1V0 245 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 ITPRIPL2Q3MIP1 535 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 ELOA3BQ3SY89 546 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 C1QL3Q5VWW1 255 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 OR10K2Q6IF99 312 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 JMJD6Q6NYC1 403 aaPredicted RBP11.21□□□□□ -0.61
NUP88-201ENST00000225696 MDGA2Q7Z553 956 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 PM20D2Q8IYS1 436 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 ELOA3Q8NG57 546 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 ZNF417Q8TAU3 575 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 SEH1LQ96EE3 360 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 KXD1Q9BQD3 176 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 ZNF416Q9BWM5 594 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 TCEAL2Q9H3H9 227 aaPredicted RBP11.21□□□□□ -0.61
NUP88-201ENST00000225696 TMEM185BQ9H7F4 350 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 MMP25Q9NPA2 562 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 HRASLS2Q9NWW9 162 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 RASL12Q9NYN1 266 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 GDE1Q9NZC3 331 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 PCOLCE2Q9UKZ9 415 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 GTF2A1LQ9UNN4 478 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 LHX6Q9UPM6 363 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 CLDN16Q9Y5I7 305 aa11.21□□□□□ -0.61
NUP88-201ENST00000225696 LINC01553A4QN01 128 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 PRAMEF2O60811 474 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 CSN2P05814 226 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 CELA2BP08218 269 aaPredicted RBP11.21□□□□□ -0.62
NUP88-201ENST00000225696 ASAH2BP0C7U1 165 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 COL9A1P20849 921 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 MAOAP21397 527 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 KIR2DL1P43626 348 aaPredicted RBP11.21□□□□□ -0.62
NUP88-201ENST00000225696 MOGAT2Q3SYC2 334 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 LIN54Q6MZP7 749 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 ATG4DQ86TL0 474 aaPredicted RBP11.21□□□□□ -0.62
NUP88-201ENST00000225696 ZSCAN1Q8NBB4 408 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 STEAP2Q8NFT2 490 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 OR10Z1Q8NGY1 313 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 GPX8Q8TED1 209 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 TSEN15Q8WW01 171 aaKnown RBP11.21□□□□□ -0.62
NUP88-201ENST00000225696 RBM18Q96H35 190 aaKnown RBP11.21□□□□□ -0.62
NUP88-201ENST00000225696 C4orf45Q96LM5 186 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 RTN4RQ9BZR6 473 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 C1orf198Q9H425 327 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 TAS2R3Q9NYW6 316 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 ERVK-19Q9WJR5 959 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 OR10H1Q9Y4A9 318 aa11.21□□□□□ -0.62
NUP88-201ENST00000225696 TMEM82A0PJX8 343 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 OR5H14A6NHG9 310 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 ZNF28P17035 718 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 RAB38P57729 211 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 MPPED2Q15777 294 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 ZNF542PQ5EBM4 170 aa11.2□□□□□ -0.62
NUP88-201ENST00000225696 TMEM196Q5HYL7 178 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms