RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ZIC4Q8N9L1 334 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 ZNF511Q8NB15 262 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 ZNF485Q8NCK3 441 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 OR10H4Q8NGA5 316 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 ROBO4Q8WZ75 1007 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 NMD3Q96D46 503 aaKnown RBP16.4■□□□□ 0.22
CLN3-254ENST00000637050 MGLLQ99685 303 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 TIMP4Q99727 224 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 MARCH7Q9H992 704 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 PAQR5Q9NXK6 330 aaPredicted RBP16.4■□□□□ 0.22
CLN3-254ENST00000637050 SPRR3Q9UBC9 169 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 FRYQ5TBA9 3013 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 PIEZO1Q92508 2521 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 DAPL1A0PJW8 107 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 ZNF716A6NP11 495 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 OR2T7P0C7T2 308 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 CPN1P15169 458 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 NAA10P41227 235 aaPredicted RBP16.4■□□□□ 0.22
CLN3-254ENST00000637050 BLVRAP53004 296 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 RPS3AP61247 264 aaKnown RBP16.4■□□□□ 0.22
CLN3-254ENST00000637050 GALEQ14376 348 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 OR2G6Q5TZ20 316 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 TIGD4Q8IY51 512 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 NOXO1Q8NFA2 376 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 OR2T27Q8NH04 317 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 OR52N1Q8NH53 320 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 YIPF6Q96EC8 236 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 ABHD17AQ96GS6 310 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 ZNF385AQ96PM9 386 aaKnown RBP16.4■□□□□ 0.22
CLN3-254ENST00000637050 TBX5Q99593 518 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 RERGLQ9H628 205 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 EXO5Q9H790 373 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 ETAA1Q9NY74 926 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 CAB39Q9Y376 341 aaPredicted RBP16.4■□□□□ 0.22
CLN3-254ENST00000637050 SPTBN4Q9H254 2564 aa16.4■□□□□ 0.22
CLN3-254ENST00000637050 A0A1W2PQL4 384 aaPredicted RBP16.39■□□□□ 0.21
CLN3-254ENST00000637050 ZNF726A6NNF4 738 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 CENPBD1B2RD01 187 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 CYTIPO60759 359 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 LIPAP38571 399 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 CD79BP40259 229 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 ZNF85Q03923 595 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 FMODQ06828 376 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 CAMK2DQ13557 499 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 ETFDHQ16134 617 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 HIST3H3Q16695 136 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 ARMCX4Q5H9R4 360 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 THEM4Q5T1C6 240 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 RPUSD3Q6P087 351 aaKnown RBP16.39■□□□□ 0.21
CLN3-254ENST00000637050 DNM1P34Q6PK57 102 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 FCRLAQ7L513 359 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 SLC16A9Q7RTY1 509 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 SLC35F2Q8IXU6 374 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 KLHL36Q8N4N3 616 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 SMAP2Q8WU79 429 aaPredicted RBP16.39■□□□□ 0.21
CLN3-254ENST00000637050 RBP7Q96R05 134 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 TAAR6Q96RI8 345 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 FUNDC2Q9BWH2 189 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 B3GNT3Q9Y2A9 372 aa16.39■□□□□ 0.21
CLN3-254ENST00000637050 A0A087WV48 116 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 A0A1B0GVC2 190 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 CCDC160A6NGH7 325 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 ZNF701M0R085 212 aaPredicted RBP16.38■□□□□ 0.21
CLN3-254ENST00000637050 PTGS2P35354 604 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 TGFBR2P37173 567 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 CLRN1P58418 232 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 SIAH3Q8IW03 269 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 ZNF420Q8TAQ5 688 aaPredicted RBP16.38■□□□□ 0.21
CLN3-254ENST00000637050 FNDC8Q8TC99 324 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 EXTL1Q92935 676 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 WDYHV1Q96HA8 205 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 OPALINQ96PE5 141 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 OR2M2Q96R28 347 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 ARHGAP9Q9BRR9 750 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 ALG8Q9BVK2 526 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 NAA50Q9GZZ1 169 aaKnown RBP16.38■□□□□ 0.21
CLN3-254ENST00000637050 PLSCR2Q9NRY7 297 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 RSL24D1Q9UHA3 163 aaKnown RBP16.38■□□□□ 0.21
CLN3-254ENST00000637050 FLVCR1Q9Y5Y0 555 aa16.38■□□□□ 0.21
CLN3-254ENST00000637050 IGKV1D-43A0A0B4J1Z2 117 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 TVP23AA6NH52 213 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 KHDRBS3O75525 346 aaKnown RBP16.37■□□□□ 0.21
CLN3-254ENST00000637050 ZNF432O94892 652 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 SCG5P05408 212 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 HSMCR30P0CW71 290 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 HCCSP53701 268 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 TMBIM6P55061 237 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 GLO1Q04760 184 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 MLLT11Q13015 90 aaPredicted RBP16.37■□□□□ 0.21
CLN3-254ENST00000637050 ZNF322Q6U7Q0 402 aaPredicted RBP16.37■□□□□ 0.21
CLN3-254ENST00000637050 TMPRSS11AQ6ZMR5 421 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 ANKRD13BQ86YJ7 626 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 ERI1Q8IV48 349 aaKnown RBP16.37■□□□□ 0.21
CLN3-254ENST00000637050 TMEM123Q8N131 208 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 GATAD2BQ8WXI9 593 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 ISOC1Q96CN7 298 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 DOK1Q99704 481 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 ISYNA1Q9NPH2 558 aa16.37■□□□□ 0.21
CLN3-254ENST00000637050 COA3Q9Y2R0 106 aaPredicted RBP16.37■□□□□ 0.21
CLN3-254ENST00000637050 URB1O60287 2271 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms