RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 FAM32AQ9Y421 112 aaKnown RBP12.34□□□□□ -0.43
PNKP-223ENST00000629179 YLPM1P49750 1951 aaKnown RBP12.33□□□□□ -0.44
PNKP-223ENST00000629179 EFCAB9A8MZ26 197 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 B2RBV5 119 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 SMAD7O15105 426 aaKnown RBP12.33□□□□□ -0.44
PNKP-223ENST00000629179 ARPC2O15144 300 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 H1F0P07305 194 aaKnown RBP12.33□□□□□ -0.44
PNKP-223ENST00000629179 INHBBP09529 407 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 PATE4P0C8F1 98 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 RHCEP18577 417 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 GPR4P46093 362 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 DAP3P51398 398 aaKnown RBP12.33□□□□□ -0.44
PNKP-223ENST00000629179 CTXN1P60606 82 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 HGFACQ04756 655 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 TOP3AQ13472 1001 aaPredicted RBP12.33□□□□□ -0.44
PNKP-223ENST00000629179 HIST3H3Q16695 136 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 GSG1Q2KHT4 349 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 ALG10Q5BKT4 473 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 ARMC4Q5T2S8 1044 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 PODNL1Q6PEZ8 512 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 MBOAT2Q6ZWT7 520 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 RRM2BQ7LG56 351 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 PIWIL3Q7Z3Z3 882 aaKnown RBP12.33□□□□□ -0.44
PNKP-223ENST00000629179 IGFN1Q86VF2 1251 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 SKA3Q8IX90 412 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 CDK20Q8IZL9 346 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 LRRC75AQ8NAA5 344 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 CCDC197Q8NCU1 140 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 NOXO1Q8NFA2 376 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 OR13C2Q8NGS9 318 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 FGFBP3Q8TAT2 258 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 SLC7A13Q8TCU3 470 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 MCHR2Q969V1 340 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 PYURFQ96I23 114 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 ZNF75AQ96N20 296 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 TXNIPQ9H3M7 391 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 MOV10Q9HCE1 1003 aaKnown RBP12.33□□□□□ -0.44
PNKP-223ENST00000629179 TMEM38BQ9NVV0 291 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 NDE1Q9NXR1 346 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 FAM53CQ9NYF3 392 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 MAGEL2Q9UJ55 1249 aa12.33□□□□□ -0.44
PNKP-223ENST00000629179 IGHV2OR16-5A0A0B4J2B6 119 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 CDC42EP2O14613 210 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 ACVR1BP36896 505 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 GIPRP48546 466 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 PTDSS1P48651 473 aaKnown RBP12.32□□□□□ -0.44
PNKP-223ENST00000629179 MNAT1P51948 309 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 RAB1AP62820 205 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 CLEC12BQ2HXU8 276 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 MST1LQ2TV78 715 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 IQCCQ4KMZ1 466 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 FGD3Q5JSP0 725 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 VHLLQ6RSH7 139 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 HDDC2Q7Z4H3 204 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 OAFQ86UD1 273 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 SLC22A24Q8N4F4 322 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 NANOS1Q8WY41 292 aaKnown RBP12.32□□□□□ -0.44
PNKP-223ENST00000629179 HDAC2Q92769 488 aaKnown RBP12.32□□□□□ -0.44
PNKP-223ENST00000629179 FBXO17Q96EF6 278 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 MS4A3Q96HJ5 214 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 NSMCE2Q96MF7 247 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 SEPHS2Q99611 448 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 SH3GL3Q99963 347 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 ANKRD19PQ9H560 264 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 CA10Q9NS85 328 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 ADAM21Q9UKJ8 722 aa12.32□□□□□ -0.44
PNKP-223ENST00000629179 ZNF346Q9UL40 294 aaKnown RBP12.32□□□□□ -0.44
PNKP-223ENST00000629179 TRBV4-1A0A0J9YWV2 114 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 A0A1W2PRQ8 180 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 CENPBD1B2RD01 187 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 SLC2A10O95528 541 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 SEMG1P04279 462 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 OR8G3PP0DMU2 310 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 ZNF14P17017 642 aaPredicted RBP12.31□□□□□ -0.44
PNKP-223ENST00000629179 RPL27P61353 136 aaKnown RBP12.31□□□□□ -0.44
PNKP-223ENST00000629179 CHRNB3Q05901 458 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 FMODQ06828 376 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 TNK1Q13470 666 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 DGCR6Q14129 220 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 RAB39AQ14964 217 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 SEC23BQ15437 767 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 TAF11Q15544 211 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 RINLQ6ZS11 566 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 TMPRSS11FQ6ZWK6 438 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 Q71RC1 249 aaPredicted RBP12.31□□□□□ -0.44
PNKP-223ENST00000629179 CLDN22Q8N7P3 220 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 OR4F15Q8NGB8 312 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 OR4K5Q8NGD3 323 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 OR52J3Q8NH60 311 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 FAM46AQ96IP4 442 aaKnown RBP12.31□□□□□ -0.44
PNKP-223ENST00000629179 COX4I2Q96KJ9 171 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 KCNK17Q96T54 332 aa12.31□□□□□ -0.44
PNKP-223ENST00000629179 NIPBLQ6KC79 2804 aaeCLIP12.3□□□□□ -0.44
PNKP-223ENST00000629179 IGKV1D-43A0A0B4J1Z2 117 aa12.3□□□□□ -0.44
PNKP-223ENST00000629179 NPIPB13A6NJU9 1138 aa12.3□□□□□ -0.44
PNKP-223ENST00000629179 NPIPB4C9JG80 1138 aa12.3□□□□□ -0.44
PNKP-223ENST00000629179 SSX4O60224 188 aa12.3□□□□□ -0.44
PNKP-223ENST00000629179 UBL3O95164 117 aa12.3□□□□□ -0.44
PNKP-223ENST00000629179 RAB36O95755 333 aa12.3□□□□□ -0.44
PNKP-223ENST00000629179 IGHMP01871 453 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms