RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SLC25A1P53007 311 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 SNTA1Q13424 505 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 EEF1A1P5Q5VTE0 462 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 GRINAQ7Z429 371 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 FAM220AQ7Z4H9 259 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 PPP1R3BQ86XI6 285 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 CDC20BQ86Y33 519 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 DEFB123Q8N688 67 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 OR10G3Q8NGC4 313 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 EDAQ92838 391 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 RFT1Q96AA3 541 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 INTS14Q96SY0 518 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 KCNJ15Q99712 375 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 MED29Q9NX70 200 aa9.58□□□□□ -0.88
CUX1-221ENST00000622516 TRAV6A0A075B6T7 132 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 H0YC42 278 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 CCL4P13236 92 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 ZNF16P17020 682 aaPredicted RBP9.57□□□□□ -0.88
CUX1-221ENST00000622516 ALOX5APP20292 161 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 IL10RAQ13651 578 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 GPR176Q14439 515 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 SF3B4Q15427 424 aaKnown RBP eCLIP9.57□□□□□ -0.885e-6■■■■□ 20.8
CUX1-221ENST00000622516 CCDC157Q569K6 752 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 FCRLAQ7L513 359 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 RABEPKQ7Z6M1 372 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 OR5AK2Q8NH90 309 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 IFI44Q8TCB0 444 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 SPSB2Q99619 263 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 EMC6Q9BV81 110 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 TGIF2Q9GZN2 237 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 B9D1Q9UPM9 204 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 TRAV1-2A0A0B4J238 106 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 PRSS37A4D1T9 235 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 MEN1O00255 615 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 NPIPB7O75200 414 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 AHSA1O95433 338 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 TXNDC12O95881 172 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 APEHP13798 732 aaKnown RBP9.57□□□□□ -0.88
CUX1-221ENST00000622516 SQSTM1Q13501 440 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 CCDC58Q4VC31 144 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 LURAP1LQ8IV03 231 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 CCNL2Q96S94 520 aaPredicted RBP9.57□□□□□ -0.88
CUX1-221ENST00000622516 UQCC2Q9BRT2 126 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 AUNIPQ9H7T9 357 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 PLSCR2Q9NRY7 297 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 TEKT2Q9UIF3 430 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 MOKQ9UQ07 419 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 SLC22A13Q9Y226 551 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 NOSIPQ9Y314 301 aaKnown RBP9.57□□□□□ -0.88
CUX1-221ENST00000622516 ALG5Q9Y673 324 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 TRAV8-7A0A075B6U6 113 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 ANKRD34BA5PLL1 514 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 OR6C76A6NM76 312 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 PLPP3O14495 311 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 SLC43A1O75387 559 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 ABHD16AO95870 558 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 FBXO45P0C2W1 286 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 RPL27P61353 136 aaKnown RBP9.57□□□□□ -0.88
CUX1-221ENST00000622516 RPS15P62841 145 aaKnown RBP9.57□□□□□ -0.88
CUX1-221ENST00000622516 FOXF1Q12946 379 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 ALKBH1Q13686 389 aaKnown RBP9.57□□□□□ -0.88
CUX1-221ENST00000622516 SGCBQ16585 318 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 PRAMEF20Q5VT98 475 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 MZT2BQ6NZ67 158 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 OVCH1Q7RTY7 1134 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 PRSS35Q8N3Z0 413 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 ZNF676Q8N7Q3 588 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 TRIM63Q969Q1 353 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 KCTD12Q96CX2 325 aaKnown RBP9.57□□□□□ -0.88
CUX1-221ENST00000622516 UBL7Q96S82 380 aaPredicted RBP9.57□□□□□ -0.88
CUX1-221ENST00000622516 LIN7BQ9HAP6 207 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 ELOVL3Q9HB03 270 aa9.57□□□□□ -0.88
CUX1-221ENST00000622516 MRPL22Q9NWU5 206 aaKnown RBP9.57□□□□□ -0.88
CUX1-221ENST00000622516 IGLV3-12A0A075B6K2 115 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 SMLR1H3BR10 107 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 EFNA2O43921 213 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 HLA-DQB1P01920 261 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 TACSTD2P09758 323 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 FAM157BP0CG42 384 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 IFNGR1P15260 489 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 ADRA2CP18825 462 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 RBMS1P29558 406 aaKnown RBP9.56□□□□□ -0.88
CUX1-221ENST00000622516 ADAM8P78325 824 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 PLA2G7Q13093 441 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 SF3A2Q15428 464 aaKnown RBP9.56□□□□□ -0.88
CUX1-221ENST00000622516 HYAL4Q2M3T9 481 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 YOD1Q5VVQ6 348 aaPredicted RBP9.56□□□□□ -0.88
CUX1-221ENST00000622516 OR7E24Q6IFN5 339 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 CPEB2Q7Z5Q1 589 aaKnown RBP9.56□□□□□ -0.88
CUX1-221ENST00000622516 LINC00346Q8IVM7 164 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 CMTM4Q8IZR5 234 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 TEX19Q8NA77 164 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 NXPE2Q96DL1 559 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 SEMA4CQ9C0C4 833 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 TP63Q9H3D4 680 aaPredicted RBP9.56□□□□□ -0.88
CUX1-221ENST00000622516 COA3Q9Y2R0 106 aaPredicted RBP9.56□□□□□ -0.88
CUX1-221ENST00000622516 IGKV1D-43A0A0B4J1Z2 117 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 ZNF254O75437 659 aa9.56□□□□□ -0.88
CUX1-221ENST00000622516 GATBO75879 557 aaKnown RBP9.56□□□□□ -0.88
CUX1-221ENST00000622516 PNPP00491 289 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms