RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 TXNIPQ9H3M7 391 aa14.17□□□□□ -0.14
CPSF1-213ENST00000620219 NRIP3Q9NQ35 241 aa14.17□□□□□ -0.14
CPSF1-213ENST00000620219 SEMA5BQ9P283 1151 aa14.17□□□□□ -0.14
CPSF1-213ENST00000620219 ZNF407Q9C0G0 2248 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 CBR3O75828 277 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 KLF7O75840 302 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-213ENST00000620219 GABRA5P31644 462 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 CD97P48960 835 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 RRADP55042 308 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 M1APQ8TC57 530 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 NPAS1Q99742 590 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 ARHGAP9Q9BRR9 750 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 FGF20Q9NP95 211 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-213ENST00000620219 UPB1Q9UBR1 384 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 SPTAN1Q13813 2472 aaKnown RBP14.16□□□□□ -0.14
CPSF1-213ENST00000620219 CLPSP04118 112 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 CRYBB2P43320 205 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 ZNF84P51523 738 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 CSRP2Q16527 193 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 HYAL4Q2M3T9 481 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 ZNF468Q5VIY5 522 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-213ENST00000620219 AGAP7PQ5VUJ5 663 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 VASH1Q7L8A9 365 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-213ENST00000620219 ATCAYQ86WG3 371 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 AGAP4Q96P64 663 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 HIF3AQ9Y2N7 669 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 PCDHGB6Q9Y5F9 930 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 PCDHGB2Q9Y5G2 931 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 LOC101059948A0A1B0GTJ6 334 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 OR2M5A3KFT3 312 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 KLK10O43240 276 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 MPZL1O95297 269 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 SLC2A2P11168 524 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-213ENST00000620219 LTBQ06643 244 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 DCAF10Q5QP82 559 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 PPP1R32Q7Z5V6 425 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 OR6V1Q8N148 313 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 OR52N1Q8NH53 320 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 STK35Q8TDR2 534 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 UBASH3BQ8TF42 649 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 SIGLEC11Q96RL6 698 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 S100A13Q99584 98 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 CALHM2Q9HA72 323 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 CAMK2AQ9UQM7 478 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 CEP192Q8TEP8 1941 aa14.16□□□□□ -0.14
CPSF1-213ENST00000620219 DCDC2BA2VCK2 349 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 BOLA2-SMG1P6H3BVE0 249 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 CDAP32320 146 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 MTFR2Q6P444 385 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 SSX6Q7RTT6 188 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 DCXRQ7Z4W1 244 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 ZNF100Q8IYN0 542 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 SLC35B4Q969S0 331 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 DDX28Q9NUL7 540 aaKnown RBP14.15□□□□□ -0.14
CPSF1-213ENST00000620219 A0A1B0GTH9 108 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 RAB25P57735 213 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 EGR4Q05215 589 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 ZMAT1Q5H9K5 638 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 DCDC5Q6ZRR9 648 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 MOKQ9UQ07 419 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 TP53BP1Q12888 1972 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-213ENST00000620219 H0YC42 278 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 HPGDSO60760 199 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 RAB3BP20337 219 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 ADH7P40394 386 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 PAMR1Q6UXH9 720 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 GALNT16Q8N428 558 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 ABHD4Q8TB40 342 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 SLC25A43Q8WUT9 341 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-213ENST00000620219 DCLRE1CQ96SD1 692 aaKnown RBP14.15□□□□□ -0.14
CPSF1-213ENST00000620219 PLEK2Q9NYT0 353 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 CFAP54Q96N23 3096 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 TMEM269A0A1B0GVZ9 245 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 A0A1W2PQ72 361 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 ARPC3O15145 178 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 NKX2-8O15522 239 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 NR2C1P13056 603 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 CPEP16870 476 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 CLDN12P56749 244 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 GDPGP1Q6ZNW5 385 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 BMPERQ8N8U9 685 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 ZSCAN1Q8NBB4 408 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 NPEPL1Q8NDH3 523 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 C17orf47Q8NEP4 570 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 DOCK7Q96N67 2140 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 MFRPQ9BY79 579 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 INPP5EQ9NRR6 644 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 NKIRAS2Q9NYR9 191 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 EXTL2Q9UBQ6 330 aa14.15□□□□□ -0.14
CPSF1-213ENST00000620219 CTLA4P16410 223 aa14.14□□□□□ -0.15
CPSF1-213ENST00000620219 ZNF20P17024 532 aa14.14□□□□□ -0.15
CPSF1-213ENST00000620219 ENPP1P22413 925 aa14.14□□□□□ -0.15
CPSF1-213ENST00000620219 BLVRAP53004 296 aa14.14□□□□□ -0.15
CPSF1-213ENST00000620219 SUMO3P55854 103 aaPredicted RBP14.14□□□□□ -0.15
CPSF1-213ENST00000620219 NTRK2Q16620 822 aa14.14□□□□□ -0.15
CPSF1-213ENST00000620219 MESTQ5EB52 335 aa14.14□□□□□ -0.15
CPSF1-213ENST00000620219 HDDC2Q7Z4H3 204 aa14.14□□□□□ -0.15
CPSF1-213ENST00000620219 FGD2Q7Z6J4 655 aa14.14□□□□□ -0.15
CPSF1-213ENST00000620219 HPS1Q92902 700 aa14.14□□□□□ -0.15
CPSF1-213ENST00000620219 FAM71F1Q96KD3 344 aaPredicted RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms