RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MCHR2Q969V1 340 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 NMD3Q96D46 503 aaKnown RBP14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 FEVQ99581 238 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 NGBQ9NPG2 151 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 PDP1Q9P0J1 537 aaPredicted RBP14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 POFUT2Q9Y2G5 429 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 AMDHD2Q9Y303 409 aa14.49□□□□□ -0.09
CCDC28A-202ENST00000611852 APCP25054 2843 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 CYSRT1A8MQ03 144 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 ARHGEF9O43307 516 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 DHHO43323 396 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 SEC14L2O76054 403 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 LOXP28300 417 aaPredicted RBP14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 SDHAP31040 664 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 HOXC12P31275 282 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 SLC6A6P31641 620 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 ZNF133P52736 654 aaPredicted RBP14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 KRTAP10-9P60411 292 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 CD47Q08722 323 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 ATP6AP1Q15904 470 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 MESTQ5EB52 335 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 BEX5Q5H9J7 111 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 C1QTNF12Q5T7M4 302 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 GPR139Q6DWJ6 353 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 RASSF6Q6ZTQ3 369 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 HS3ST5Q8IZT8 346 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 PIK3IP1Q96FE7 263 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 SAMD8Q96LT4 415 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 ZNF570Q96NI8 536 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 FOXB1Q99853 325 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 NIPSNAP1Q9BPW8 284 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 ALG12Q9BV10 488 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 CLEC4MQ9H2X3 399 aaPredicted RBP14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 EGLN3Q9H6Z9 239 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 IL20Q9NYY1 176 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 NPAP1Q9NZP6 1156 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 IER3IP1Q9Y5U9 82 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 CDH10Q9Y6N8 788 aa14.48□□□□□ -0.09
CCDC28A-202ENST00000611852 TEX13CA0A0J9YWL9 993 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 MGRN1O60291 552 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 APEHP13798 732 aaKnown RBP14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 GSTM3P21266 225 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 FASP25445 335 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 RPS6KA3P51812 740 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 FMODQ06828 376 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 RIPK1Q13546 671 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 C10orf128Q5T292 105 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 FBXW10Q5XX13 1052 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 RPL13AP3Q6NVV1 102 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 SHQ1Q6PI26 577 aaKnown RBP14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 KLHL24Q6TFL4 600 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 CD300LDQ6UXZ3 194 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 ZNF813Q6ZN06 617 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 PYDC1Q8WXC3 89 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 RASD2Q96D21 266 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 PLPPR2Q96GM1 343 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 HS3ST6Q96QI5 342 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 DENND2DQ9H6A0 471 aaPredicted RBP14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 SMURF2Q9HAU4 748 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 OBP2BQ9NPH6 170 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 MAGED1Q9Y5V3 778 aaPredicted RBP14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 HRNRQ86YZ3 2850 aaPredicted RBP14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 NOTCH2Q04721 2471 aa14.47□□□□□ -0.09
CCDC28A-202ENST00000611852 ARPC4-TTLL3A0A0A6YYG9 625 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 IGKV1D-43A0A0B4J1Z2 117 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 A0A1W2PPR1 153 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 H7C1C5 153 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 XKRYO14609 159 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 ARPC3O15145 178 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 SLC2A10O95528 541 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 PPP1R3DO95685 299 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 TXNDC12O95881 172 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 FCGR1AP12314 374 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 NR2C1P13056 603 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 HOXB1P14653 301 aaPredicted RBP14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 B4GALT1P15291 398 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 PRKACGP22612 351 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 ARHGDIAP52565 204 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 NR1H2P55055 460 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 UBE2NP61088 152 aaKnown RBP14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 LCN6P62502 163 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 KRR1Q13601 381 aaKnown RBP14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 THEM4Q5T1C6 240 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 NCMAPQ5T1S8 102 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 FNDC8Q8TC99 324 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 LRTOMTQ8WZ04 291 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 NRBF2Q96F24 287 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 ERMAPQ96PL5 475 aaPredicted RBP14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 RBP7Q96R05 134 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 IFT27Q9BW83 186 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 PLA2G12AQ9BZM1 189 aa14.46□□□□□ -0.09
CCDC28A-202ENST00000611852 PRSS37A4D1T9 235 aa14.46□□□□□ -0.1
CCDC28A-202ENST00000611852 SOCS2O14508 198 aa14.46□□□□□ -0.1
CCDC28A-202ENST00000611852 WNT11O96014 354 aa14.46□□□□□ -0.1
CCDC28A-202ENST00000611852 TP53P04637 393 aaPredicted RBP14.46□□□□□ -0.1
CCDC28A-202ENST00000611852 ZNF83P51522 516 aa14.46□□□□□ -0.1
CCDC28A-202ENST00000611852 COX10Q12887 443 aa14.46□□□□□ -0.1
CCDC28A-202ENST00000611852 CLEC12AQ5QGZ9 265 aa14.46□□□□□ -0.1
CCDC28A-202ENST00000611852 SLC25A47Q6Q0C1 308 aa14.46□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms