RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ZNF627Q7L945 461 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 OR4K5Q8NGD3 323 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 MCHR2Q969V1 340 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 CCDC124Q96CT7 223 aaKnown RBP16.9■□□□□ 0.3
UPF1-212ENST00000601689 DHRS1Q96LJ7 313 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 TNFRSF13CQ96RJ3 184 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 ALG12Q9BV10 488 aa16.9■□□□□ 0.3
UPF1-212ENST00000601689 SHISA9B4DS77 424 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 NDUFB2O95178 105 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 IGHMP01871 453 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 SEMG1P04279 462 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 B4GALT1P15291 398 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 NPR2P20594 1047 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 FABP6P51161 128 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 NPRL3Q12980 569 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 NRN1LQ496H8 165 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 THEM4Q5T1C6 240 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 ZNF544Q6NX49 715 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 SYT14Q8NB59 555 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 OR13C2Q8NGS9 318 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 ZNF837Q96EG3 531 aaPredicted RBP16.89■□□□□ 0.29
UPF1-212ENST00000601689 DHRS9Q9BPW9 319 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 BTBD10Q9BSF8 475 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 RNF121Q9H920 327 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 SMURF2Q9HAU4 748 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 CRNNQ9UBG3 495 aaPredicted RBP16.89■□□□□ 0.29
UPF1-212ENST00000601689 ZNF346Q9UL40 294 aaKnown RBP16.89■□□□□ 0.29
UPF1-212ENST00000601689 SPEF1Q9Y4P9 236 aa16.89■□□□□ 0.29
UPF1-212ENST00000601689 HRNRQ86YZ3 2850 aaPredicted RBP16.89■□□□□ 0.29
UPF1-212ENST00000601689 ARID1AO14497 2285 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 SH3PXD2BA1X283 911 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 SEC14L2O76054 403 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 PTHP01270 115 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 IGKV3-15P01624 115 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 CD14P08571 375 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 IDH3GP51553 393 aaPredicted RBP16.88■□□□□ 0.29
UPF1-212ENST00000601689 TUBA1BP68363 451 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 TUBA4AP68366 448 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 TESK1Q15569 626 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 SLC36A2Q495M3 483 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 ARMC4Q5T2S8 1044 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 TMEM53Q6P2H8 277 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 TUBA1AQ71U36 451 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 TSEN54Q7Z6J9 526 aaKnown RBP16.88■□□□□ 0.29
UPF1-212ENST00000601689 SLC22A24Q8N4F4 322 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 OR4F15Q8NGB8 312 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 MRPL13Q9BYD1 178 aaKnown RBP16.88■□□□□ 0.29
UPF1-212ENST00000601689 NELFAQ9H3P2 528 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 MOKQ9UQ07 419 aa16.88■□□□□ 0.29
UPF1-212ENST00000601689 IGHV1-18A0A0C4DH31 117 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 TRBV4-1A0A0J9YWV2 114 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 UNC119BA6NIH7 251 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 TNFRSF11BO00300 401 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 AHCYL1O43865 530 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 DNAJC8O75937 253 aaPredicted RBP16.87■□□□□ 0.29
UPF1-212ENST00000601689 ATP6V1B2P21281 511 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 OMPP47874 163 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 RPS6KA3P51812 740 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 RAB1AP62820 205 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 LSM11P83369 360 aaKnown RBP eCLIP16.87■□□□□ 0.29
UPF1-212ENST00000601689 MYBPC1Q00872 1141 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 GPR139Q6DWJ6 353 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 LRFN4Q6PJG9 635 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 SLC16A14Q7RTX9 510 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 IGFN1Q86VF2 1251 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 MEX3DQ86XN8 651 aaKnown RBP16.87■□□□□ 0.29
UPF1-212ENST00000601689 MUC15Q8N387 334 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 LILRB1Q8NHL6 650 aaPredicted RBP16.87■□□□□ 0.29
UPF1-212ENST00000601689 GNPDA2Q8TDQ7 276 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 NEUROG1Q92886 237 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 PERPQ96FX8 193 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 RSRC1Q96IZ7 334 aaKnown RBP16.87■□□□□ 0.29
UPF1-212ENST00000601689 YY1AP1Q9H869 796 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 TMEM38BQ9NVV0 291 aa16.87■□□□□ 0.29
UPF1-212ENST00000601689 AQP12BA6NM10 295 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 CDC42EP2O14613 210 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 IGLV1-44P01699 117 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 HLA-HP01893 362 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 CECR9P0C854 216 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 RAP2AP10114 183 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 APOBEC3AP31941 199 aaPredicted RBP16.86■□□□□ 0.29
UPF1-212ENST00000601689 TTKP33981 857 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 PTDSS1P48651 473 aaKnown RBP16.86■□□□□ 0.29
UPF1-212ENST00000601689 NAAAQ02083 359 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 PLP2Q04941 152 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 PIGFQ07326 219 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 HIST3H3Q16695 136 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 PRSS57Q6UWY2 283 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 MDP1Q86V88 176 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 AQP12AQ8IXF9 295 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 ARIH2OSQ8N7S6 290 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 ZNF570Q96NI8 536 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 GSX2Q9BZM3 304 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 GRIP2Q9C0E4 1043 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 LRMDAQ9H2I8 198 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 C1orf198Q9H425 327 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 REEP1Q9H902 201 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 CBLN4Q9NTU7 201 aa16.86■□□□□ 0.29
UPF1-212ENST00000601689 FBXO9Q9UK97 447 aaPredicted RBP16.86■□□□□ 0.29
UPF1-212ENST00000601689 PMF1-BGLAPU3KQ54 211 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms