RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SGCDQ92629 289 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 GGHQ92820 318 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 TEAD3Q99594 435 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 COPS4Q9BT78 406 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 NUAK2Q9H093 628 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 DUSP21Q9H596 190 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 RERGLQ9H628 205 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 SRA1Q9HD15 236 aaKnown RBP13.01□□□□□ -0.33
VRK3-212ENST00000596814 CCNB1IP1Q9NPC3 277 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 FKBP14Q9NWM8 211 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 CLEC4AQ9UMR7 237 aa13.01□□□□□ -0.33
VRK3-212ENST00000596814 NOSIPQ9Y314 301 aaKnown RBP13.01□□□□□ -0.33
VRK3-212ENST00000596814 MED12LQ86YW9 2145 aa13□□□□□ -0.33
VRK3-212ENST00000596814 IRGMA1A4Y4 181 aa13□□□□□ -0.33
VRK3-212ENST00000596814 DCTN6O00399 190 aa13□□□□□ -0.33
VRK3-212ENST00000596814 SLC16A7O60669 478 aa13□□□□□ -0.33
VRK3-212ENST00000596814 SLC43A1O75387 559 aa13□□□□□ -0.33
VRK3-212ENST00000596814 GLCEO94923 617 aa13□□□□□ -0.33
VRK3-212ENST00000596814 YES1P07947 543 aa13□□□□□ -0.33
VRK3-212ENST00000596814 CTLA4P16410 223 aa13□□□□□ -0.33
VRK3-212ENST00000596814 GSTT1P30711 240 aa13□□□□□ -0.33
VRK3-212ENST00000596814 PTGER4P35408 488 aa13□□□□□ -0.33
VRK3-212ENST00000596814 CDH15P55291 814 aa13□□□□□ -0.33
VRK3-212ENST00000596814 THEM4Q5T1C6 240 aa13□□□□□ -0.33
VRK3-212ENST00000596814 B3GLCTQ6Y288 498 aa13□□□□□ -0.33
VRK3-212ENST00000596814 ZBTB46Q86UZ6 589 aa13□□□□□ -0.33
VRK3-212ENST00000596814 TUSC5Q8IXB3 177 aa13□□□□□ -0.33
VRK3-212ENST00000596814 WNT2BQ93097 391 aa13□□□□□ -0.33
VRK3-212ENST00000596814 MYDGFQ969H8 173 aa13□□□□□ -0.33
VRK3-212ENST00000596814 ZMYND19Q96E35 227 aaPredicted RBP13□□□□□ -0.33
VRK3-212ENST00000596814 RBP7Q96R05 134 aa13□□□□□ -0.33
VRK3-212ENST00000596814 RACGAP1Q9H0H5 632 aa13□□□□□ -0.33
VRK3-212ENST00000596814 CALHM2Q9HA72 323 aa13□□□□□ -0.33
VRK3-212ENST00000596814 GP6Q9HCN6 339 aa13□□□□□ -0.33
VRK3-212ENST00000596814 B9D1Q9UPM9 204 aa13□□□□□ -0.33
VRK3-212ENST00000596814 MOKQ9UQ07 419 aa13□□□□□ -0.33
VRK3-212ENST00000596814 CD8B2A6NJW9 211 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 FAM171A2A8MVW0 826 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 RGS10O43665 173 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 APOL3O95236 402 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 EDN3P14138 238 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 RAB40BQ12829 278 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 HIST3H3Q16695 136 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 KLHL22Q53GT1 634 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 NSUN5P2Q63ZY6 315 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 RPTNQ6XPR3 784 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 STX19Q8N4C7 294 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 TSPAN14Q8NG11 270 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 OR51G2Q8NGK0 314 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 OR6N1Q8NGY5 312 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 ZNRF4Q8WWF5 429 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 TMEM54Q969K7 222 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 NMD3Q96D46 503 aaKnown RBP12.99□□□□□ -0.33
VRK3-212ENST00000596814 LGALS12Q96DT0 336 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 GLRX2Q9NS18 164 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 MRPS18AQ9NVS2 196 aaKnown RBP12.99□□□□□ -0.33
VRK3-212ENST00000596814 HAO2Q9NYQ3 351 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 GLTPQ9NZD2 209 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 DOCK7Q96N67 2140 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 ARHGAP21Q5T5U3 1957 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 IGLV1-36A0A0B4J1U3 117 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 MRPL33O75394 65 aaKnown RBP12.99□□□□□ -0.33
VRK3-212ENST00000596814 CDK1P06493 297 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 STSP08842 583 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 SMIM18P0DKX4 95 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 AGTR1P30556 359 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 NTF4P34130 210 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 ATP6V1E1P36543 226 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 RBPJQ06330 500 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 PIGFQ07326 219 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 ST3GAL4Q11206 333 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 POU4F2Q12837 409 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 GGTLC2Q14390 218 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 C1orf185Q5T7R7 199 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 LINC01590Q5TEZ4 76 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 ZNF773Q6PK81 442 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 C20orf196Q8IYI0 205 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 OR52I1Q8NGK6 324 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 INTS12Q96CB8 462 aaKnown RBP12.99□□□□□ -0.33
VRK3-212ENST00000596814 GMPPAQ96IJ6 420 aaPredicted RBP12.99□□□□□ -0.33
VRK3-212ENST00000596814 CCDC90BQ9GZT6 254 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 PARPBPQ9NWS1 579 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 ERVK-18Q9QC07 812 aa12.99□□□□□ -0.33
VRK3-212ENST00000596814 FOXD3Q9UJU5 478 aaPredicted RBP12.99□□□□□ -0.33
VRK3-212ENST00000596814 ZGRF1Q86YA3 2104 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 A0A087WXM4 84 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 IGKV1D-43A0A0B4J1Z2 117 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 PRRG2O14669 202 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 SS18L1O75177 396 aaPredicted RBP12.98□□□□□ -0.33
VRK3-212ENST00000596814 KHDRBS3O75525 346 aaKnown RBP12.98□□□□□ -0.33
VRK3-212ENST00000596814 RAB36O95755 333 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 HTR1AP08908 422 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 CENPAP49450 140 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 ETFDHQ16134 617 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 OR2A2Q6IF42 318 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 SHFQ7M4L6 423 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 PRSS48Q7RTY5 328 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 C9orf106Q8NAJ2 232 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 POMGNT2Q8NAT1 580 aa12.98□□□□□ -0.33
VRK3-212ENST00000596814 OR4F15Q8NGB8 312 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms