RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 OR4K1Q8NGD4 311 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 OR13C9Q8NGT0 318 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 RHEBL1Q8TAI7 183 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 PPP4R1Q8TF05 950 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 TNFRSF14Q92956 283 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 SLC38A4Q969I6 547 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 UBE2E3Q969T4 207 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 TMEM45BQ96B21 275 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 MTBPQ96DY7 904 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 SGK494Q96LW2 274 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 CENPKQ9BS16 269 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 BTBD10Q9BSF8 475 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 ING2Q9H160 280 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 MARCH7Q9H992 704 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 CLK4Q9HAZ1 481 aaKnown RBP5.4□□□□□ -1.54
VPS53-212ENST00000572259 C14orf105Q9NVL8 296 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 AHSPQ9NZD4 102 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 NUDT4Q9NZJ9 180 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 ZNF639Q9UID6 485 aa5.4□□□□□ -1.54
VPS53-212ENST00000572259 ZGRF1Q86YA3 2104 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 PRRC2CQ9Y520 2896 aaKnown RBP5.39□□□□□ -1.55
VPS53-212ENST00000572259 KALRNO60229 2985 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 PRSS51A0A1B0GVH4 220 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 ARGFXA6NJG6 315 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 SNX3O60493 162 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 SMIM24O75264 130 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 KLF7O75840 302 aaPredicted RBP5.39□□□□□ -1.55
VPS53-212ENST00000572259 NEURL1O76050 574 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 MYO1DO94832 1006 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 NSA2O95478 260 aaKnown RBP5.39□□□□□ -1.55
VPS53-212ENST00000572259 SERPINA6P08185 405 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 SLC35E2BP0CK96 405 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 C1GALT1C1LP0DN25 315 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 FCGR1AP12314 374 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 ICAM2P13598 275 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 GFAPP14136 432 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 NT5EP21589 574 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 MMP11P24347 488 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 LCN1P31025 176 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 GLIPR1P48060 266 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 PGGT1BP53609 377 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 EMP2P54851 167 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 PHEXP78562 749 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 IRF8Q02556 426 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 FOXF2Q12947 444 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 PPP1R3AQ16821 1122 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 ZSWIM7Q19AV6 140 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 C6orf226Q5I0X4 101 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 TMIGD1Q6UXZ0 262 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 BHLHA15Q7RTS1 189 aaPredicted RBP5.39□□□□□ -1.55
VPS53-212ENST00000572259 CMC1Q7Z7K0 106 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 ISCA2Q86U28 154 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 PRIMA1Q86XR5 153 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.39□□□□□ -1.55
VPS53-212ENST00000572259 PLD3Q8IV08 490 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 SNX31Q8N9S9 440 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 GATSQ8NAP1 163 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 SMYD1Q8NB12 490 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 OR10Q1Q8NGQ4 319 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 TM9SF4Q92544 642 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 HIST1H2ACQ93077 130 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 NEIL2Q969S2 332 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 TM4SF19Q96DZ7 209 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 ZNF317Q96PQ6 595 aaPredicted RBP5.39□□□□□ -1.55
VPS53-212ENST00000572259 EFCAB11Q9BUY7 163 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 ALG9Q9H6U8 611 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 NT5DC2Q9H857 520 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 Q9H8V8 135 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 ANKRA2Q9H9E1 313 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 SEBOXQ9HB31 216 aaPredicted RBP5.39□□□□□ -1.55
VPS53-212ENST00000572259 TMEM165Q9HC07 324 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 MCCC2Q9HCC0 563 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 NOX4Q9NPH5 578 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 GPR83Q9NYM4 423 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 MTCH1Q9NZJ7 389 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 OPTCQ9UBM4 332 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 C19orf25Q9UFG5 118 aaPredicted RBP5.39□□□□□ -1.55
VPS53-212ENST00000572259 C3orf18Q9UK00 162 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 RALYQ9UKM9 306 aaKnown RBP5.39□□□□□ -1.55
VPS53-212ENST00000572259 RPH3ALQ9UNE2 315 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 PRELID1Q9Y255 219 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 NPTNQ9Y639 398 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 SLC22A7Q9Y694 548 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 BOD1L1Q8NFC6 3051 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 NUP210LQ5VU65 1888 aa5.39□□□□□ -1.55
VPS53-212ENST00000572259 TNRC6AQ8NDV7 1962 aaKnown RBP5.38□□□□□ -1.55
VPS53-212ENST00000572259 IGLV3-12A0A075B6K2 115 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 TRAV18A0A075B6X5 111 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 PPIAL4EA0A075B759 164 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 PPIAL4CA0A0B4J2A2 164 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 SMCO3A2RU48 225 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 VSTM2BA6NLU5 285 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 TRIM49D1C9J1S8 452 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 PDLIM1O00151 329 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 PSMD12O00232 456 aaPredicted RBP5.38□□□□□ -1.55
VPS53-212ENST00000572259 NBR2O15453 112 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 HCN1O60741 890 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 DPM1O60762 260 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 GLRA3O75311 464 aa5.38□□□□□ -1.55
VPS53-212ENST00000572259 STX11O75558 287 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms