RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 ZNF836Q6ZNA1 936 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 ZNF620Q6ZNG0 422 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 VRK2Q86Y07 508 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 SPICQ8N5J4 248 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 FNDC5Q8NAU1 212 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 OR1J1Q8NGS3 322 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 TAAR8Q969N4 342 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 LRR1Q96L50 414 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 PPP3R2Q96LZ3 170 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 TRNT1Q96Q11 434 aaKnown RBP9.85□□□□□ -0.83
CLK3-222ENST00000568232 SH3GL3Q99963 347 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 ULBP2Q9BZM5 246 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 MTHFD2LQ9H903 347 aaPredicted RBP9.85□□□□□ -0.83
CLK3-222ENST00000568232 AURKAIP1Q9NWT8 199 aaPredicted RBP9.85□□□□□ -0.83
CLK3-222ENST00000568232 DCDC2Q9UHG0 476 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 FBXL3Q9UKT7 428 aa9.85□□□□□ -0.83
CLK3-222ENST00000568232 A0A1W2PPM1 405 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 AIM2O14862 343 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 AKAP8O43823 692 aaKnown RBP9.84□□□□□ -0.83
CLK3-222ENST00000568232 TGDSO95455 350 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 OPN1MWP04001 364 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 DBIP07108 87 aaKnown RBP9.84□□□□□ -0.83
CLK3-222ENST00000568232 CHRNGP07510 517 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 OPN1MW2P0DN77 364 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 OPN1MW3P0DN78 364 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 THRBP10828 461 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 G6PDP11413 515 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 NCF2P19878 526 aaPredicted RBP9.84□□□□□ -0.83
CLK3-222ENST00000568232 UQCRC2P22695 453 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 GRPRP30550 384 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 CASQ1P31415 396 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 GNA13Q14344 377 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 ZMYND11Q15326 602 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 OXLD1Q5BKU9 147 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 THEM4Q5T1C6 240 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 FAM205BPQ63HN1 556 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 C6orf89Q6UWU4 347 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 H1FNTQ75WM6 255 aaPredicted RBP9.84□□□□□ -0.83
CLK3-222ENST00000568232 LRRC28Q86X40 367 aaPredicted RBP9.84□□□□□ -0.83
CLK3-222ENST00000568232 UEVLDQ8IX04 471 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 ZNF440Q8IYI8 595 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 OR6N1Q8NGY5 312 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 AGR3Q8TD06 166 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 IPCEF1Q8WWN9 437 aaPredicted RBP9.84□□□□□ -0.83
CLK3-222ENST00000568232 SLC47A1Q96FL8 570 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 MECRQ9BV79 373 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 BCL2L14Q9BZR8 327 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 EGLN1Q9GZT9 426 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 NOX4Q9NPH5 578 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 B3GAT2Q9NPZ5 323 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 TMEM106BQ9NUM4 274 aa9.84□□□□□ -0.83
CLK3-222ENST00000568232 MARCOQ9UEW3 520 aaPredicted RBP9.84□□□□□ -0.83
CLK3-222ENST00000568232 A0A096LPI6 279 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 LOC102725191A0A1B0GVB3 256 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 PLSCR5A0PG75 271 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 RNASET2O00584 256 aaKnown RBP9.83□□□□□ -0.84
CLK3-222ENST00000568232 GPR137BO60478 399 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 PLIN3O60664 434 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 MFN2O95140 757 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 CPA3P15088 417 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 CHI3L1P36222 383 aaPredicted RBP9.83□□□□□ -0.84
CLK3-222ENST00000568232 HOXC5Q00444 222 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 MAPK11Q15759 364 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 SMU1Q2TAY7 513 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 TMEM155Q4W5P6 130 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 XKR7Q5GH72 579 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 BTNL3Q6UXE8 466 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 LRRN1Q6UXK5 716 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 NHLRC1Q6VVB1 395 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 WDR88Q6ZMY6 472 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 LRRC74BQ6ZQY2 392 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 Q6ZSV7 163 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 PIWIL3Q7Z3Z3 882 aaKnown RBP9.83□□□□□ -0.84
CLK3-222ENST00000568232 SERPINA11Q86U17 422 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 C10orf107Q8IVU9 208 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 C1orf174Q8IYL3 243 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 CLIP4Q8N3C7 705 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 SLC22A24Q8N4F4 322 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 TMEM86BQ8N661 226 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 ACMSDQ8TDX5 336 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 MZB1Q8WU39 189 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 RAB40AQ8WXH6 277 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 SGCDQ92629 289 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 DYRK2Q92630 601 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 SLC35A5Q9BS91 424 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 RNF121Q9H920 327 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 MSL2Q9HCI7 577 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 TCF7L2Q9NQB0 619 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 TBK1Q9UHD2 729 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 IL20RAQ9UHF4 553 aa9.83□□□□□ -0.84
CLK3-222ENST00000568232 IGHV2-70DA0A0C4DH43 119 aa9.82□□□□□ -0.84
CLK3-222ENST00000568232 FZD7O75084 574 aa9.82□□□□□ -0.84
CLK3-222ENST00000568232 GLRA3O75311 464 aa9.82□□□□□ -0.84
CLK3-222ENST00000568232 SERPINI2O75830 405 aa9.82□□□□□ -0.84
CLK3-222ENST00000568232 SNAP29O95721 258 aa9.82□□□□□ -0.84
CLK3-222ENST00000568232 IGHV4-59P01825 116 aa9.82□□□□□ -0.84
CLK3-222ENST00000568232 FGF4P08620 206 aa9.82□□□□□ -0.84
CLK3-222ENST00000568232 WNT2P09544 360 aa9.82□□□□□ -0.84
CLK3-222ENST00000568232 NQO1P15559 274 aaKnown RBP9.82□□□□□ -0.84
CLK3-222ENST00000568232 ARRB2P32121 409 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms