RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ZNF19P17023 458 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 PAX6P26367 422 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 AGTR1P30556 359 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 OR52E1Q8NGJ3 308 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 OR2A1Q8NGT9 310 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 SMPDL3BQ92485 455 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 TM4SF18Q96CE8 201 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 MRGPRX1Q96LB2 322 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 PRDM6Q9NQX0 595 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 TDRD6O60522 2096 aaKnown RBP12.12□□□□□ -0.47
CLK3-206ENST00000562078 OR5H14A6NHG9 310 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 IFITM10A6NMD0 228 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 NPIPB9F8W1W9 429 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 CLDN4O14493 209 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 PPM1DO15297 605 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 TMPRSS11DO60235 418 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 NDUFV2P19404 249 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 PTNP21246 168 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 DLSTP36957 453 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 CSNK1EP49674 416 aaKnown RBP12.12□□□□□ -0.47
CLK3-206ENST00000562078 CLDN2P57739 230 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 ILF3Q12906 894 aaKnown RBP eCLIP12.12□□□□□ -0.47
CLK3-206ENST00000562078 TAF13Q15543 124 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 OR7A5Q15622 319 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 GLT8D1Q68CQ7 371 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 Q6ZS52 159 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 FCRLAQ7L513 359 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 OSTF1Q92882 214 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 FAM131CQ96AQ9 280 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 C4orf36Q96KX1 117 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 TTTY10Q9BZA0 68 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 GFOD1Q9NXC2 390 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 ICKQ9UPZ9 632 aa12.12□□□□□ -0.47
CLK3-206ENST00000562078 OR2AT4A6NND4 320 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 OR2F2O95006 317 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 MT-ND4LP03901 98 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 MRPL3P09001 348 aaKnown RBP12.11□□□□□ -0.47
CLK3-206ENST00000562078 SFTA3P0C7M3 94 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 CD79AP11912 226 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 ACKR3P25106 362 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 NRG3P56975 720 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 OR12D2P58182 307 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 PRDX1Q06830 199 aaKnown RBP12.11□□□□□ -0.47
CLK3-206ENST00000562078 HSPB3Q12988 150 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 OR2F1Q13607 317 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 TOMM20Q15388 145 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 TMEM69Q5SWH9 247 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 AMER3Q8N944 861 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 OR2L8Q8NGY9 312 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 C1orf216Q8TAB5 229 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 STOML3Q8TAV4 291 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 RAB3CQ96E17 227 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 NECAB3Q96P71 396 aaPredicted RBP12.11□□□□□ -0.47
CLK3-206ENST00000562078 FBXL21Q9UKT6 434 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 A0A1W2PPH5 198 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 PRR19A6NJB7 356 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 H0Y8X5 98 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 MT-ND5P03915 603 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 CERS1P27544 350 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 MNDAP41218 407 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 ZNF345Q14585 488 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 ADAM5Q6NVV9 412 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 UBE3DQ7Z6J8 389 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 TGM7Q96PF1 710 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 MACROD1Q9BQ69 325 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 NDC1Q9BTX1 674 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 SLITRK2Q9H156 845 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 CCDC86Q9H6F5 360 aaKnown RBP12.11□□□□□ -0.47
CLK3-206ENST00000562078 RPS10P5Q9NQ39 176 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 KNL1Q8NG31 2342 aa12.11□□□□□ -0.47
CLK3-206ENST00000562078 TMEM72A0PK05 275 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 PRSS38A1L453 326 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 CPED1A4D0V7 1026 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 EMC8O43402 210 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 EPPINO95925 133 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 NR2C1P13056 603 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 DDTP30046 118 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 PYCR1P32322 319 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 BCL6P41182 706 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 SSR2P43308 183 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 ANXA11P50995 505 aaKnown RBP12.1□□□□□ -0.47
CLK3-206ENST00000562078 MANFP55145 182 aaKnown RBP12.1□□□□□ -0.47
CLK3-206ENST00000562078 PARGQ86W56 976 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 OR51S1Q8NGJ8 323 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 OR4C16Q8NGL9 310 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 C3orf49Q96BT1 292 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 RAB11FIP5Q9BXF6 653 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 AICDAQ9GZX7 198 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 PRO1933Q9H354 126 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 SEC61A2Q9H9S3 476 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 A4GALTQ9NPC4 353 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 POT1Q9NUX5 634 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 ANKRD10Q9NXR5 420 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 COL6A3P12111 3177 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 A0A087X0M5 115 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 TRAV1-2A0A0B4J238 106 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 A0A1B0GX30 115 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 MAGEB4O15481 346 aaPredicted RBP12.1□□□□□ -0.47
CLK3-206ENST00000562078 ZNF749O43361 778 aa12.1□□□□□ -0.47
CLK3-206ENST00000562078 RAB5AP20339 215 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms