RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 OR52E2Q8NGJ4 325 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 ZNF519Q8TB69 540 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 ITLN2Q8WWU7 325 aaPredicted RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 RNASE6Q93091 150 aaKnown RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 KCNK17Q96T54 332 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 SLC29A1Q99808 456 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 RBM24Q9BX46 236 aaKnown RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 GABARAPL3Q9BY60 117 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 MRPL13Q9BYD1 178 aaKnown RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 OPN3Q9H1Y3 402 aaPredicted RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 OR10A4Q9H209 315 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 SLC24A3Q9HC58 644 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 SMPD3Q9NY59 655 aaPredicted RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 TAS2R16Q9NYV7 291 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 H2AFY2Q9P0M6 372 aaPredicted RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 NKX1-2Q9UD57 310 aaPredicted RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 MALT1Q9UDY8 824 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 IL20RAQ9UHF4 553 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 TMEFF2Q9UIK5 374 aaPredicted RBP8.16□□□□□ -1.1
LDLR-210ENST00000559340 GPR52Q9Y2T5 361 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 ADAM18Q9Y3Q7 739 aa8.16□□□□□ -1.1
LDLR-210ENST00000559340 WIPF3A6NGB9 483 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 FAM90A27PA6NNH2 459 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 ZAR1LA6NP61 321 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 C16orf97H3BN30 126 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 DHHO43323 396 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 MPZL2O60487 215 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 MITFO75030 526 aaPredicted RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 KHDRBS3O75525 346 aaKnown RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 FARS2O95363 451 aaKnown RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 QDPRP09417 244 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 PGA4P0DJD7 388 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 PGA3P0DJD8 388 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 PPP3CBP16298 524 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 HIST1H1CP16403 213 aaKnown RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 ZNF26P17031 533 aaPredicted RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 NPR2P20594 1047 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 IL32P24001 234 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 PEX2P28328 305 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 HOXC12P31275 282 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 HSPA13P48723 471 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 BLVRAP53004 296 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 ROR2Q01974 943 aaKnown RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 SLC35F1Q5T1Q4 408 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 TSPO2Q5TGU0 170 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 SLX4IPQ5VYV7 408 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 LEG1Q6P5S2 330 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 NCCRP1Q6ZVX7 275 aaPredicted RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 DPPA2Q7Z7J5 298 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 LUZP2Q86TE4 346 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 P2RY8Q86VZ1 359 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 LIX1LQ8IVB5 337 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 DHRSXQ8N5I4 330 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 SYT14Q8NB59 555 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 RELL2Q8NC24 303 aaPredicted RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 C1orf162Q8NEQ5 155 aaPredicted RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 OR8D4Q8NGM9 314 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 OR2T4Q8NH00 348 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 OR4K13Q8NH42 304 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 TRUB1Q8WWH5 349 aaKnown RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 HDAC2Q92769 488 aaKnown RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 KISS1RQ969F8 398 aaPredicted RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 MCHR2Q969V1 340 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 RASD2Q96D21 266 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 PSMG3-AS1Q96PY0 264 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 APOL4Q9BPW4 351 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 PLA2G12AQ9BZM1 189 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 KCNN2Q9H2S1 579 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 FN3KQ9H479 309 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 GPR35Q9HC97 309 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 MOV10Q9HCE1 1003 aaKnown RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 CMC2Q9NRP2 79 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 SLC7A10Q9NS82 523 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 IMPAD1Q9NX62 359 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 TVP23BQ9NYZ1 205 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 VSX1Q9NZR4 365 aaPredicted RBP8.15□□□□□ -1.1
LDLR-210ENST00000559340 NDRG3Q9UGV2 375 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 PRSS50Q9UI38 385 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 FKBP7Q9Y680 259 aa8.15□□□□□ -1.1
LDLR-210ENST00000559340 ICE1Q9Y2F5 2266 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 RTTNQ86VV8 2226 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 LOC100130705A0A1B0GUX0 176 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 SLC22A23A1A5C7 686 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 SNTNA6NMZ2 147 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 ZNF99A8MXY4 864 aaPredicted RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 PRR23D1E9PI22 279 aaPredicted RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 SLC16A6O15403 523 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 UPK3AO75631 287 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 IGHV3-9P01782 118 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 IGFBP1P08833 259 aaPredicted RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 PRR23D2P0DMB1 279 aaPredicted RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 PSMB1P20618 241 aaKnown RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 NTF4P34130 210 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 VHLP40337 213 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 CDKN2AP42771 156 aaKnown RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 PTDSS1P48651 473 aaKnown RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 ZNF133P52736 654 aaPredicted RBP8.14□□□□□ -1.11
LDLR-210ENST00000559340 SLC25A1P53007 311 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 SORDQ00796 357 aa8.14□□□□□ -1.11
LDLR-210ENST00000559340 SNCBQ16143 134 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms