RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SCGNO76038 276 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 HLA-DPB1P04440 258 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 UGT2B4P06133 528 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 BCHEP06276 602 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 CDH4P55283 916 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 TCP10Q12799 353 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 CDC20Q12834 499 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 PON3Q15166 354 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 PDK4Q16654 411 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 TRIM40Q6P9F5 258 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 TMEM179Q6ZVK1 233 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 PEX26Q7Z412 305 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 GATSQ8NAP1 163 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 NEURL3Q96EH8 262 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 RNF5Q99942 180 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 ZSCAN5AQ9BUG6 496 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 SYNDIG1Q9H7V2 258 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 YY1AP1Q9H869 796 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 ZNF586Q9NXT0 402 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 N6AMT1Q9Y5N5 214 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 S4R3C0 116 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 DOCK8Q8NF50 2099 aa1.71□□□□□ -2.13
SCFD1-216ENST00000555550 ITGB4P16144 1822 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 A0A0B4J2A0 478 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 A8MUU9 505 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 HIDE1A8MVS5 230 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 C1GALT1C1LP0DN25 315 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 CALM1P0DP23 149 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 CALM2P0DP24 149 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 CALM3P0DP25 149 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 KRT13P13646 458 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 SMUG1Q53HV7 270 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 RIPPLY2Q5TAB7 128 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 PRMT9Q6P2P2 845 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 CEP112Q8N8E3 955 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 OR4S2Q8NH73 311 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 ABHD3Q8WU67 409 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 RTN4IP1Q8WWV3 396 aaPredicted RBP1.71□□□□□ -2.14
SCFD1-216ENST00000555550 NARS2Q96I59 477 aaKnown RBP1.71□□□□□ -2.14
SCFD1-216ENST00000555550 SENP8Q96LD8 212 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 MS4A4EQ96PG1 132 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 RBM14Q96PK6 669 aaKnown RBP1.71□□□□□ -2.14
SCFD1-216ENST00000555550 CAMK2N2Q96S95 79 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 SORT1Q99523 831 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 MRPL37Q9BZE1 423 aaKnown RBP1.71□□□□□ -2.14
SCFD1-216ENST00000555550 TAS2R3Q9NYW6 316 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 CTSFQ9UBX1 484 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 SHPKQ9UHJ6 478 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 ZNF229Q9UJW7 825 aa1.71□□□□□ -2.14
SCFD1-216ENST00000555550 MBLAC1A4D2B0 266 aaPredicted RBP1.7□□□□□ -2.14
SCFD1-216ENST00000555550 ZNF207O43670 478 aaKnown RBP1.7□□□□□ -2.14
SCFD1-216ENST00000555550 PRKAB2O43741 272 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 IFNB1P01574 187 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 RPA2P15927 270 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 OPRK1P41145 380 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 CDKN2BP42772 138 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 SLC11A1P49279 550 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 HTD2P86397 168 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 FILIP1LQ4L180 1135 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 PHYHD1Q5SRE7 291 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 DUX4L9Q6RFH8 374 aaPredicted RBP1.7□□□□□ -2.14
SCFD1-216ENST00000555550 KDM7AQ6ZMT4 941 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 OAFQ86UD1 273 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 CALHM1Q8IU99 346 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 PRSS58Q8IYP2 241 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 PUSL1Q8N0Z8 303 aaKnown RBP1.7□□□□□ -2.14
SCFD1-216ENST00000555550 LRRC52Q8N7C0 313 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 ZNF557Q8N988 423 aaPredicted RBP1.7□□□□□ -2.14
SCFD1-216ENST00000555550 OR2G2Q8NGZ5 317 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 COQ8AQ8NI60 647 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 MAGEE2Q8TD90 523 aaPredicted RBP1.7□□□□□ -2.14
SCFD1-216ENST00000555550 TBRG4Q969Z0 631 aaKnown RBP eCLIP1.7□□□□□ -2.14
SCFD1-216ENST00000555550 HSFY1Q96LI6 401 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 SLC38A2Q96QD8 506 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 OR8B4Q96RC9 309 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 CDX2Q99626 313 aaPredicted RBP1.7□□□□□ -2.14
SCFD1-216ENST00000555550 SH3GL3Q99963 347 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 RARRES2Q99969 163 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 ZNF717Q9BY31 904 aaPredicted RBP1.7□□□□□ -2.14
SCFD1-216ENST00000555550 PALMDQ9NP74 551 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 PSG8Q9UQ74 426 aa1.7□□□□□ -2.14
SCFD1-216ENST00000555550 CARHSP1Q9Y2V2 147 aaKnown RBP1.7□□□□□ -2.14
SCFD1-216ENST00000555550 PTPRTO14522 1441 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 RGSL1A5PLK6 1076 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 ERLIN2O94905 339 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 CCNE2O96020 404 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 ATP5C1P36542 298 aaKnown RBP1.69□□□□□ -2.14
SCFD1-216ENST00000555550 HSD17B2P37059 387 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 OPRD1P41143 372 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 RORCP51449 518 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 UGT2B15P54855 530 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 CDK16Q00536 496 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 IFT88Q13099 833 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 MAB21L1Q13394 359 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 ARHGAP19Q14CB8 494 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 IGFBP7Q16270 282 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 SNRNP35Q16560 246 aaKnown RBP1.69□□□□□ -2.14
SCFD1-216ENST00000555550 SPIN3Q5JUX0 258 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 MFSD9Q8NBP5 474 aa1.69□□□□□ -2.14
SCFD1-216ENST00000555550 CREB3L1Q96BA8 519 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms