RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ZNF587BE7ETH6 402 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 SLC2A10O95528 541 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 SNAP29O95721 258 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 IGHV1-2P23083 117 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 GRNP28799 593 aaKnown RBP18.67■□□□□ 0.58
VPS29-206ENST00000549578 TFF3Q07654 80 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.67■□□□□ 0.58
VPS29-206ENST00000549578 FAM27E3Q08E93 113 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 TSC22D1Q15714 1073 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 FBXL19-AS1Q494R0 122 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 LRFN4Q6PJG9 635 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 ADCK1Q86TW2 530 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 JAZF1Q86VZ6 243 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 CXorf67Q86X51 503 aaPredicted RBP18.67■□□□□ 0.58
VPS29-206ENST00000549578 SDR9C7Q8NEX9 313 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 NMNAT3Q96T66 252 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 ALG12Q9BV10 488 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 SLC25A19Q9HC21 320 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 GPR35Q9HC97 309 aa18.67■□□□□ 0.58
VPS29-206ENST00000549578 SLC22A23A1A5C7 686 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 ZAR1LA6NP61 321 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 LYZL6O75951 148 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 ITGA5P08648 1049 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 QDPRP09417 244 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 CDH2P19022 906 aaPredicted RBP18.66■□□□□ 0.58
VPS29-206ENST00000549578 GRK5P34947 590 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 DBPQ10586 325 aaPredicted RBP18.66■□□□□ 0.58
VPS29-206ENST00000549578 ZNF362Q5T0B9 420 aaPredicted RBP18.66■□□□□ 0.58
VPS29-206ENST00000549578 LEG1Q6P5S2 330 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 MCHR2Q969V1 340 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 NMD3Q96D46 503 aaKnown RBP18.66■□□□□ 0.58
VPS29-206ENST00000549578 MBOAT4Q96T53 435 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 SYT4Q9H2B2 425 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 TOR3AQ9H497 397 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 B3GAT2Q9NPZ5 323 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 ADGRG4Q8IZF6 3080 aa18.66■□□□□ 0.58
VPS29-206ENST00000549578 COL12A1Q99715 3063 aa18.65■□□□□ 0.58
VPS29-206ENST00000549578 IGKV1D-43A0A0B4J1Z2 117 aa18.65■□□□□ 0.58
VPS29-206ENST00000549578 COX5AP20674 150 aa18.65■□□□□ 0.58
VPS29-206ENST00000549578 CD79BP40259 229 aa18.65■□□□□ 0.58
VPS29-206ENST00000549578 CEACAM16Q2WEN9 425 aa18.65■□□□□ 0.58
VPS29-206ENST00000549578 STAC2Q6ZMT1 411 aa18.65■□□□□ 0.58
VPS29-206ENST00000549578 ABHD12BQ7Z5M8 362 aaPredicted RBP18.65■□□□□ 0.58
VPS29-206ENST00000549578 PACRGLQ8N7B6 248 aa18.65■□□□□ 0.58
VPS29-206ENST00000549578 CYB561A3Q8NBI2 242 aa18.65■□□□□ 0.58
VPS29-206ENST00000549578 RNASE6Q93091 150 aaKnown RBP18.65■□□□□ 0.58
VPS29-206ENST00000549578 ELOVL5Q9NYP7 299 aa18.65■□□□□ 0.58
VPS29-206ENST00000549578 RPL36A-HNRNPH2H7BZ11 118 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 DLGAP1O14490 977 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 MPGP29372 298 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 ITGADQ13349 1161 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 P2RY6Q15077 328 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 SLX4IPQ5VYV7 408 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 FBXW10Q5XX13 1052 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 SLC37A3Q8NCC5 494 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 NPEPL1Q8NDH3 523 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 RBP7Q96R05 134 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 FN3KQ9H479 309 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 C8orf4Q9NR00 106 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 CMC2Q9NRP2 79 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 SMPD3Q9NY59 655 aaPredicted RBP18.64■□□□□ 0.58
VPS29-206ENST00000549578 TAS2R16Q9NYV7 291 aa18.64■□□□□ 0.58
VPS29-206ENST00000549578 VSX1Q9NZR4 365 aaPredicted RBP18.64■□□□□ 0.58
VPS29-206ENST00000549578 OR6C68A6NDL8 312 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 RIIAD1A6NNX1 92 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 SEC14L2O76054 403 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 CCKARP32238 428 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 CRMP1Q14194 572 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 THEM4Q5T1C6 240 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 SFRP5Q5T4F7 317 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 ZNF433Q8N7K0 673 aaPredicted RBP18.64■□□□□ 0.57
VPS29-206ENST00000549578 NSMAFQ92636 917 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 LRRC46Q96FV0 321 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 TSSK2Q96PF2 358 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 RERGLQ9H628 205 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 NPDC1Q9NQX5 325 aaPredicted RBP18.64■□□□□ 0.57
VPS29-206ENST00000549578 TVP23BQ9NYZ1 205 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 KLHL21Q9UJP4 597 aa18.64■□□□□ 0.57
VPS29-206ENST00000549578 HCFC1P51610 2035 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 M0R129 80 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 SURF4O15260 269 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 DHHO43323 396 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 AHCYL1O43865 530 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 RAD51DO75771 328 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 RENP00797 406 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 IFNGP01579 166 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 HMGN1P05114 100 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 NR2C1P13056 603 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 CTLA4P16410 223 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 PSMB1P20618 241 aaKnown RBP18.63■□□□□ 0.57
VPS29-206ENST00000549578 FNDC8Q8TC99 324 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 KISS1RQ969F8 398 aaPredicted RBP18.63■□□□□ 0.57
VPS29-206ENST00000549578 SNX18Q96RF0 628 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 DDOQ99489 341 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 TEX12Q9BXU0 123 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 GRIP2Q9C0E4 1043 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 NUAK2Q9H093 628 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 RPRD1BQ9NQG5 326 aaKnown RBP18.63■□□□□ 0.57
VPS29-206ENST00000549578 GPR52Q9Y2T5 361 aa18.63■□□□□ 0.57
VPS29-206ENST00000549578 CIB4A0PJX0 185 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms