RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 FLNCQ14315 2725 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 CACNA1CQ13936 2221 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 M0R3G1 203 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 CASQ2O14958 399 aaPredicted RBP10.73□□□□□ -0.69
DDX55-210ENST00000543016 ARHGEF9O43307 516 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 SOX14O95416 240 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 PPP1R3DO95685 299 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 RENP00797 406 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 IGHV1-2P23083 117 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 IL32P24001 234 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 CRABP1P29762 137 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 UGT2B10P36537 528 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 GUCA1AP43080 201 aaPredicted RBP10.73□□□□□ -0.69
DDX55-210ENST00000543016 ZNF84P51523 738 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 MYBPC1Q00872 1141 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 ROR2Q01974 943 aaKnown RBP10.73□□□□□ -0.69
DDX55-210ENST00000543016 SLC34A1Q06495 639 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 GINS1Q14691 196 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 CDSNQ15517 529 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 TRIP10Q15642 601 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 PGGHGQ32M88 737 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 CLEC12AQ5QGZ9 265 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 C10orf128Q5T292 105 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 CARD17Q5XLA6 110 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 DNM1P34Q6PK57 102 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 STAC2Q6ZMT1 411 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 ZNF627Q7L945 461 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 JAZF1Q86VZ6 243 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 ZNF433Q8N7K0 673 aaPredicted RBP10.73□□□□□ -0.69
DDX55-210ENST00000543016 HDAC2Q92769 488 aaKnown RBP10.73□□□□□ -0.69
DDX55-210ENST00000543016 MCHR2Q969V1 340 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 NMD3Q96D46 503 aaKnown RBP10.73□□□□□ -0.69
DDX55-210ENST00000543016 MUS81Q96NY9 551 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 SPOCK3Q9BQ16 436 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 GABARAPL3Q9BY60 117 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 PLA2G12AQ9BZM1 189 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 VCXQ9H320 206 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 CRLF2Q9HC73 371 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 NDRG3Q9UGV2 375 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 IL20RAQ9UHF4 553 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 TMEFF2Q9UIK5 374 aaPredicted RBP10.73□□□□□ -0.69
DDX55-210ENST00000543016 FREM1Q5H8C1 2179 aa10.73□□□□□ -0.69
DDX55-210ENST00000543016 TEX13CA0A0J9YWL9 993 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 CIB4A0PJX0 185 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 SLC22A23A1A5C7 686 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 RIIAD1A6NNX1 92 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 ZNF99A8MXY4 864 aaPredicted RBP10.72□□□□□ -0.69
DDX55-210ENST00000543016 EI24O14681 340 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 DHHO43323 396 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 IGHV3-9P01782 118 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 QDPRP09417 244 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 ZNF3P17036 446 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 IGFBP2P18065 325 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 NPR2P20594 1047 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 EDNRAP25101 427 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 POU1F1P28069 291 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 CENPAP49450 140 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 CDK5Q00535 292 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 RUNX1T1Q06455 604 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 CD47Q08722 323 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 FAM27E3Q08E93 113 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 NPRL3Q12980 569 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 MESTQ5EB52 335 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 TIMM23BQ5SRD1 257 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 ANKRD16Q6P6B7 361 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 LRFN4Q6PJG9 635 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 BHLHA15Q7RTS1 189 aaPredicted RBP10.72□□□□□ -0.69
DDX55-210ENST00000543016 DPPA2Q7Z7J5 298 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 CXorf67Q86X51 503 aaPredicted RBP10.72□□□□□ -0.69
DDX55-210ENST00000543016 SYT14Q8NB59 555 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 ACBD4Q8NC06 268 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 OR8D4Q8NGM9 314 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 HSD17B8Q92506 261 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 PSMG3-AS1Q96PY0 264 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 ALKBH3Q96Q83 286 aaPredicted RBP10.72□□□□□ -0.69
DDX55-210ENST00000543016 SLC38A2Q96QD8 506 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 WACQ9BTA9 647 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 CMC2Q9NRP2 79 aa10.72□□□□□ -0.69
DDX55-210ENST00000543016 RRP15Q9Y3B9 282 aaKnown RBP10.72□□□□□ -0.69
DDX55-210ENST00000543016 TUBAL3A6NHL2 446 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 PRSS44E7EML9 344 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 SOCS2O14508 198 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 KHDRBS3O75525 346 aaKnown RBP10.71□□□□□ -0.69
DDX55-210ENST00000543016 GOSR1O95249 250 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 ITGA5P08648 1049 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 RNF224P0DH78 156 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 HIST1H1CP16403 213 aaKnown RBP10.71□□□□□ -0.69
DDX55-210ENST00000543016 PAICSP22234 425 aaKnown RBP10.71□□□□□ -0.69
DDX55-210ENST00000543016 HOXC12P31275 282 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 BLVRAP53004 296 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 SLC25A1P53007 311 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.71□□□□□ -0.69
DDX55-210ENST00000543016 PTGES3Q15185 160 aaKnown RBP10.71□□□□□ -0.69
DDX55-210ENST00000543016 GABRA6Q16445 453 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 CEACAM16Q2WEN9 425 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 SLX4IPQ5VYV7 408 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 SLC25A47Q6Q0C1 308 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.71□□□□□ -0.69
DDX55-210ENST00000543016 OR52E2Q8NGJ4 325 aa10.71□□□□□ -0.69
DDX55-210ENST00000543016 OR4Q3Q8NH05 313 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms