RNA–Protein interactions for RNA: ENST00000538827.5

CD4-208, Transcript of CD4 molecule, humanhuman

TSL 1 (best)

Gene CD4, Length 985 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-208ENST00000538827 RNFT2Q96EX2 444 aa12.56□□□□□ -0.4
CD4-208ENST00000538827 SLC25A44Q96H78 314 aaPredicted RBP12.56□□□□□ -0.4
CD4-208ENST00000538827 TSSK2Q96PF2 358 aa12.56□□□□□ -0.4
CD4-208ENST00000538827 OR2M2Q96R28 347 aa12.56□□□□□ -0.4
CD4-208ENST00000538827 ALG12Q9BV10 488 aa12.56□□□□□ -0.4
CD4-208ENST00000538827 SRA1Q9HD15 236 aaKnown RBP12.56□□□□□ -0.4
CD4-208ENST00000538827 ASB6Q9NWX5 421 aa12.56□□□□□ -0.4
CD4-208ENST00000538827 CLCF1Q9UBD9 225 aa12.56□□□□□ -0.4
CD4-208ENST00000538827 PLEKHB1Q9UF11 243 aaPredicted RBP12.56□□□□□ -0.4
CD4-208ENST00000538827 NOSIPQ9Y314 301 aaKnown RBP12.56□□□□□ -0.4
CD4-208ENST00000538827 TPRKBQ9Y3C4 175 aa12.56□□□□□ -0.4
CD4-208ENST00000538827 GTF3C1Q12789 2109 aa12.56□□□□□ -0.4
CD4-208ENST00000538827 FBN2P35556 2912 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 SLC22A23A1A5C7 686 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 CCDC182A6NF36 153 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 PTGES3LE9PB15 166 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 GPR171O14626 319 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 SLC16A7O60669 478 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 MRPL3P09001 348 aaKnown RBP12.55□□□□□ -0.4
CD4-208ENST00000538827 CRHBPP24387 322 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 HTR1FP30939 366 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 SELENOPP49908 381 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 SLC25A1P53007 311 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 SIRPAP78324 504 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 EFNB1P98172 346 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 RBPJQ06330 500 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 KCTD21Q4G0X4 260 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 GTF2IRD2BQ6EKJ0 949 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 DNM1P34Q6PK57 102 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 B3GLCTQ6Y288 498 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 MEPCEQ7L2J0 689 aaKnown RBP12.55□□□□□ -0.4
CD4-208ENST00000538827 SHFQ7M4L6 423 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 GTF2IRD2Q86UP8 949 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 TUSC5Q8IXB3 177 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 NSMAFQ92636 917 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 ZMYND19Q96E35 227 aaPredicted RBP12.55□□□□□ -0.4
CD4-208ENST00000538827 FOXN4Q96NZ1 517 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 SNX18Q96RF0 628 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 KCNK17Q96T54 332 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 CCDC90BQ9GZT6 254 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 VSX1Q9NZR4 365 aaPredicted RBP12.55□□□□□ -0.4
CD4-208ENST00000538827 SH3BGRL2Q9UJC5 107 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.55□□□□□ -0.4
CD4-208ENST00000538827 RCE1Q9Y256 329 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 RPL36Q9Y3U8 105 aaKnown RBP12.55□□□□□ -0.4
CD4-208ENST00000538827 DOCK7Q96N67 2140 aa12.55□□□□□ -0.4
CD4-208ENST00000538827 IGKV3D-15A0A087WSY6 115 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 A0A1W2PPL8 197 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 MAGEA13PA6NCF6 341 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 SLC22A31A6NKX4 558 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 AHRRA9YTQ3 701 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 PRRG2O14669 202 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 WDR1O75083 606 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 SLC43A1O75387 559 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 CCDC159P0C7I6 412 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 PGA4P0DJD7 388 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 PGA3P0DJD8 388 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 GABRA1P14867 456 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 SLC2A5P22732 501 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 GSTT1P30711 240 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 ATP6V1E1P36543 226 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 CDH15P55291 814 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 GABARAPL2P60520 117 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 CXCR4P61073 352 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 CSNK2BP67870 215 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 PIGFQ07326 219 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 SF3B4Q15427 424 aaKnown RBP eCLIP12.54□□□□□ -0.4
CD4-208ENST00000538827 IGFBP7Q16270 282 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 SLC25A30Q5SVS4 291 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 NHLRC1Q6VVB1 395 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.54□□□□□ -0.4
CD4-208ENST00000538827 MED12LQ86YW9 2145 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 GCNT2Q8N0V5 402 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 STX19Q8N4C7 294 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 ZIC4Q8N9L1 334 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 C9orf106Q8NAJ2 232 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 OR51G2Q8NGK0 314 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 CPT1CQ8TCG5 803 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 SGCDQ92629 289 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 PTP4A1Q93096 173 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 RBP7Q96R05 134 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 COPS4Q9BT78 406 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 YTHDF1Q9BYJ9 559 aaKnown RBP12.54□□□□□ -0.4
CD4-208ENST00000538827 ULBP2Q9BZM5 246 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 NMNAT2Q9BZQ4 307 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 NUAK2Q9H093 628 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 C12orf49Q9H741 205 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 ZNF696Q9H7X3 374 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 WARS2Q9UGM6 360 aaKnown RBP12.54□□□□□ -0.4
CD4-208ENST00000538827 PSORS1C1Q9UIG5 152 aa12.54□□□□□ -0.4
CD4-208ENST00000538827 ING1Q9UK53 422 aaPredicted RBP12.54□□□□□ -0.4
CD4-208ENST00000538827 CACNA1DQ01668 2161 aa12.53□□□□□ -0.4
CD4-208ENST00000538827 CENPEQ02224 2701 aa12.53□□□□□ -0.4
CD4-208ENST00000538827 EFCAB10A6NFE3 127 aa12.53□□□□□ -0.4
CD4-208ENST00000538827 ZNF724A8MTY0 619 aa12.53□□□□□ -0.4
CD4-208ENST00000538827 MRPL33O75394 65 aaKnown RBP12.53□□□□□ -0.4
CD4-208ENST00000538827 KHDRBS3O75525 346 aaKnown RBP12.53□□□□□ -0.4
CD4-208ENST00000538827 KRT33AO76009 404 aa12.53□□□□□ -0.4
CD4-208ENST00000538827 HLA-DQA2P01906 255 aa12.53□□□□□ -0.4
CD4-208ENST00000538827 NR2C1P13056 603 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms