RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 LAMP5Q9UJQ1 280 aa18.56■□□□□ 0.56
VPS28-209ENST00000528142 RPH3AQ9Y2J0 694 aaPredicted RBP18.56■□□□□ 0.56
VPS28-209ENST00000528142 CMAHPQ9Y471 501 aa18.56■□□□□ 0.56
VPS28-209ENST00000528142 MRPS18BQ9Y676 258 aaKnown RBP18.56■□□□□ 0.56
VPS28-209ENST00000528142 TRBV2A0A0J9YWF9 115 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 RGS5O15539 181 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 UPK3AO75631 287 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 CRABP1P29762 137 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 ATP1A4Q13733 1029 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 FAM27D1Q5T7N8 215 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 ZNF227Q86WZ6 799 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 LAX1Q8IWV1 398 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 OR13C5Q8NGS8 318 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 OTOSQ8NHW6 89 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 AP3S1Q92572 193 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 CEP19Q96LK0 163 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 MIXL1Q9H2W2 232 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 MED29Q9NX70 200 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 TMEM14AQ9Y6G1 99 aa18.55■□□□□ 0.56
VPS28-209ENST00000528142 CBR3O75828 277 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 UPK1BO75841 260 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 NCR1O76036 304 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 TACSTD2P09758 323 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 OR8G3PP0DMU2 310 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 CALRP27797 417 aaKnown RBP18.54■□□□□ 0.56
VPS28-209ENST00000528142 RPS27P42677 84 aaKnown RBP18.54■□□□□ 0.56
VPS28-209ENST00000528142 OR2B6P58173 313 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 NANOS3P60323 173 aaKnown RBP18.54■□□□□ 0.56
VPS28-209ENST00000528142 EGR3Q06889 387 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 DCDC5Q6ZRR9 648 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 NR2C2APQ86WQ0 139 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 MIB2Q96AX9 1013 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 JSRP1Q96MG2 331 aaPredicted RBP18.54■□□□□ 0.56
VPS28-209ENST00000528142 ABCB9Q9NP78 766 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 SACM1LQ9NTJ5 587 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 KLHL13Q9P2N7 655 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 TRAPPC4Q9Y296 219 aa18.54■□□□□ 0.56
VPS28-209ENST00000528142 ZNF593O00488 134 aaPredicted RBP18.53■□□□□ 0.56
VPS28-209ENST00000528142 SERPINA3P01011 423 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 P04436 131 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 FTH1P19P0C7X4 201 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 SFTPDP35247 375 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 PTGS2P35354 604 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 RAB43Q86YS6 212 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 BEST3Q8N1M1 668 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 CENPSQ8N2Z9 138 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 THOC3Q96J01 351 aaKnown RBP18.53■□□□□ 0.56
VPS28-209ENST00000528142 FOXN4Q96NZ1 517 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 ATF6BQ99941 703 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 PDCD1LG2Q9BQ51 273 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 A0A0G2JMM0 328 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 A0A1W2PPB8 328 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 A0A1W2PRS3 328 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 KIR3DP1A8MWS1 328 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 ZNF814B7Z6K7 855 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 LOC110117498-PIK3R3F6TDL0 507 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 STMND1H3BQB6 276 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 PHYHO14832 338 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 GPRIN2O60269 458 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 HLA-DQA2P01906 255 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 DNASE1L1P49184 302 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 ZMAT1Q5H9K5 638 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 LIPNQ5VXI9 398 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 JMJD6Q6NYC1 403 aaPredicted RBP18.53■□□□□ 0.56
VPS28-209ENST00000528142 TMPPEQ6ZT21 453 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 HAVCR2Q8TDQ0 301 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 AMELYQ99218 206 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 SDHCQ99643 169 aaPredicted RBP18.53■□□□□ 0.56
VPS28-209ENST00000528142 MROQ9BYG7 248 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 KCNG2Q9UJ96 466 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 COA3Q9Y2R0 106 aaPredicted RBP18.53■□□□□ 0.56
VPS28-209ENST00000528142 UGT2A1Q9Y4X1 527 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 V9GYH0 126 aa18.53■□□□□ 0.56
VPS28-209ENST00000528142 KRT8P05787 483 aa18.52■□□□□ 0.56
VPS28-209ENST00000528142 MRPL28Q13084 256 aaKnown RBP18.52■□□□□ 0.56
VPS28-209ENST00000528142 OTPQ5XKR4 325 aa18.52■□□□□ 0.56
VPS28-209ENST00000528142 PAMR1Q6UXH9 720 aa18.52■□□□□ 0.56
VPS28-209ENST00000528142 UNQ9370/PRO34162Q6UXP9 181 aa18.52■□□□□ 0.56
VPS28-209ENST00000528142 FAM220AQ7Z4H9 259 aa18.52■□□□□ 0.56
VPS28-209ENST00000528142 TPRA1Q86W33 373 aa18.52■□□□□ 0.56
VPS28-209ENST00000528142 YIPF7Q8N8F6 280 aa18.52■□□□□ 0.56
VPS28-209ENST00000528142 THEM6Q8WUY1 208 aa18.52■□□□□ 0.56
VPS28-209ENST00000528142 IL17BQ9UHF5 180 aa18.52■□□□□ 0.56
VPS28-209ENST00000528142 ING1Q9UK53 422 aaPredicted RBP18.52■□□□□ 0.56
VPS28-209ENST00000528142 DKKL1Q9UK85 242 aa18.52■□□□□ 0.56
VPS28-209ENST00000528142 OR2M5A3KFT3 312 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 CENPBD1B2RD01 187 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 SEC14L5O43304 696 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 TBX1O43435 398 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 GATBO75879 557 aaKnown RBP18.51■□□□□ 0.55
VPS28-209ENST00000528142 ZNF17P17021 662 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 BIDP55957 195 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 SLC35A1P78382 337 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 GLO1Q04760 184 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 FMODQ06828 376 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 OXA1LQ15070 435 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 ZNF181Q2M3W8 571 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 UEVLDQ8IX04 471 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 HSD17B8Q92506 261 aa18.51■□□□□ 0.55
VPS28-209ENST00000528142 MAP6Q96JE9 813 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms