RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 GRNP28799 593 aaKnown RBP13.52□□□□□ -0.25
LSM1-203ENST00000520755 OR3A2P47893 321 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 EFNB1P98172 346 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 CRMP1Q14194 572 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 ZNF691Q5VV52 312 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 CARD17Q5XLA6 110 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 FAM205BPQ63HN1 556 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 NIPAL3Q6P499 406 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 ZNF474Q6S9Z5 364 aaPredicted RBP13.52□□□□□ -0.25
LSM1-203ENST00000520755 LINGO2Q7L985 606 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 UBE2J2Q8N2K1 259 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 SLC37A3Q8NCC5 494 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 NPEPL1Q8NDH3 523 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 OR52E2Q8NGJ4 325 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 FAM81AQ8TBF8 368 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 UBE2FQ969M7 185 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 ADAD1Q96M93 576 aaKnown RBP13.52□□□□□ -0.25
LSM1-203ENST00000520755 NMNAT3Q96T66 252 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 HCAR1Q9BXC0 346 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 FN3KQ9H479 309 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 HINT3Q9NQE9 182 aaKnown RBP13.52□□□□□ -0.25
LSM1-203ENST00000520755 PARPBPQ9NWS1 579 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 GALNT8Q9NY28 637 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 ZNF226Q9NYT6 803 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 TVP23BQ9NYZ1 205 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 FOXD3Q9UJU5 478 aaPredicted RBP13.52□□□□□ -0.25
LSM1-203ENST00000520755 GPR52Q9Y2T5 361 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 GMPPBQ9Y5P6 360 aa13.52□□□□□ -0.25
LSM1-203ENST00000520755 KLF2Q9Y5W3 355 aaPredicted RBP13.52□□□□□ -0.25
LSM1-203ENST00000520755 IGKV1D-43A0A0B4J1Z2 117 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 OR6C68A6NDL8 312 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 A6NIZ1 184 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 ARHGEF9O43307 516 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 GABRB1P18505 474 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 NOS3P29474 1203 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 PCYT1AP49585 367 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 RAP1BP61224 184 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 RAP1AP62834 184 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 FMODQ06828 376 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 HIST3H3Q16695 136 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 FBXL19-AS1Q494R0 122 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 ADCK1Q86TW2 530 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 ENTHD1Q8IYW4 607 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 CYB561A3Q8NBI2 242 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 ZNF555Q8NEP9 628 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 RNASE6Q93091 150 aaKnown RBP13.51□□□□□ -0.25
LSM1-203ENST00000520755 TMEM54Q969K7 222 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 SLC25A44Q96H78 314 aaPredicted RBP13.51□□□□□ -0.25
LSM1-203ENST00000520755 PSMG3-AS1Q96PY0 264 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 NPDC1Q9NQX5 325 aaPredicted RBP13.51□□□□□ -0.25
LSM1-203ENST00000520755 VSX1Q9NZR4 365 aaPredicted RBP13.51□□□□□ -0.25
LSM1-203ENST00000520755 AASSQ9UDR5 926 aa13.51□□□□□ -0.25
LSM1-203ENST00000520755 SLC22A23A1A5C7 686 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 PRSS37A4D1T9 235 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 FAM183AA6NL82 134 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 DCTN6O00399 190 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 AKAP8O43823 692 aaKnown RBP13.5□□□□□ -0.25
LSM1-203ENST00000520755 UPK3AO75631 287 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 IGHG1P01857 330 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 HMGN1P05114 100 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 HSPA13P48723 471 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 FAM27E3Q08E93 113 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 SNTB1Q13884 538 aaKnown RBP13.5□□□□□ -0.25
LSM1-203ENST00000520755 SNAPC1Q16533 368 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 TSPO2Q5TGU0 170 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 TTC23Q5W5X9 447 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 LEG1Q6P5S2 330 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 BEND4Q6ZU67 534 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 C20orf196Q8IYI0 205 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 TCEANCQ8N8B7 351 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 SYT14Q8NB59 555 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 BBS1Q8NFJ9 593 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 APH1BQ8WW43 257 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 ZNF566Q969W8 418 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 MUS81Q96NY9 551 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 ALKBH3Q96Q83 286 aaPredicted RBP13.5□□□□□ -0.25
LSM1-203ENST00000520755 SLC38A2Q96QD8 506 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 SNX18Q96RF0 628 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 ALG12Q9BV10 488 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 ANKRD60Q9BZ19 345 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 NMNAT2Q9BZQ4 307 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 SYT4Q9H2B2 425 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 SLCO5A1Q9H2Y9 848 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 MED20Q9H944 212 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 UPB1Q9UBR1 384 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 KLHL21Q9UJP4 597 aa13.5□□□□□ -0.25
LSM1-203ENST00000520755 LRRK2Q5S007 2527 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 ZNF726A6NNF4 738 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 RIIAD1A6NNX1 92 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 XKRYO14609 159 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 KRT33AO76009 404 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 CLUP10909 449 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 CTLA4P16410 223 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 ZNF3P17036 446 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 CD79BP40259 229 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 CSNK1A1P48729 337 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 ZNF133P52736 654 aaPredicted RBP13.49□□□□□ -0.25
LSM1-203ENST00000520755 CDC42P60953 191 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 FBXW9Q5XUX1 488 aa13.49□□□□□ -0.25
LSM1-203ENST00000520755 HDDC2Q7Z4H3 204 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms