RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PAQR4Q8N4S7 273 aaPredicted RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 ASB13Q8WXK3 278 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 RRNAD1Q96FB5 475 aaKnown RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 CASD1Q96PB1 797 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 CYTL1Q9NRR1 136 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 UPB1Q9UBR1 384 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 MRPS18CQ9Y3D5 142 aaKnown RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 V9GY05 133 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 J3QRE1 110 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 CYB5BO43169 146 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF432O94892 652 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 AIFM1O95831 613 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 TSPAN15O95858 294 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 KLK1P06870 262 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 MPZP25189 248 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 MANFP55145 182 aaKnown RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 HSD11B2P80365 405 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF177Q13360 481 aaPredicted RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 EBPQ15125 230 aaKnown RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 TMEM220Q6QAJ8 160 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 DRAM2Q6UX65 266 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 TMPPEQ6ZT21 453 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 CAMKMTQ7Z624 323 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 MRGPREQ86SM8 312 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 LINC00471Q8N535 108 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 GFI1Q99684 422 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 ANKRD10Q9NXR5 420 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 KCNE5Q9UJ90 142 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 NTNG1Q9Y2I2 539 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 MSGN1A6NI15 193 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 F8VVB4 439 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 F8VWA3 439 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 ADAP1O75689 374 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 GZMBP10144 247 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 PRKAG1P54619 331 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 EIF4EBP2Q13542 120 aaPredicted RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 NKPD1Q17RQ9 610 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 NIPAL3Q6P499 406 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 COMMD6Q7Z4G1 85 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 TEX19Q8NA77 164 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 RNASE8Q8TDE3 154 aaKnown RBP11□□□□□ -0.65
LIMCH1-213ENST00000511496 MITD1Q8WV92 249 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 C22orf15Q8WYQ4 148 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 GALNT14Q96FL9 552 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 CALML5Q9NZT1 146 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 IL17CQ9P0M4 197 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 STEAP1Q9UHE8 339 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 SH2B3Q9UQQ2 575 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 CACNA1CQ13936 2221 aa11□□□□□ -0.65
LIMCH1-213ENST00000511496 SPTBP11277 2137 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 A0A1B0GTI1 187 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 C9J4A7 227 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 GLSO94925 669 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 RAB40ALP0C0E4 278 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 PSMB6P28072 239 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 SOX2P48431 317 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 SKP1P63208 163 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 EGR3Q06889 387 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 NFATC4Q14934 902 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 NR0B2Q15466 257 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 VHLLQ6RSH7 139 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 ANKRD33Q7Z3H0 272 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 ARL14Q8N4G2 192 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 TRAM1L1Q8N609 369 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 OR51L1Q8NGJ5 315 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 RAB40AQ8WXH6 277 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 SAT2Q96F10 170 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 HIST1H2BLQ99880 126 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 KCNJ16Q9NPI9 418 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 CDV3Q9UKY7 258 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 FBXO7Q9Y3I1 522 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 FAM157AC9JC47 383 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 MAN2B1O00754 1011 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 CXCL1P09341 107 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF286BP0CG31 522 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 PAX1P15863 534 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 PTGER1P34995 402 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF85Q03923 595 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF616Q08AN1 781 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 C9orf64Q5T6V5 341 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 TAS1R1Q7RTX1 841 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 GID4Q8IVV7 300 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 OR5R1Q8NH85 324 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 TERB2Q8NHR7 220 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 SMIM8Q96KF7 97 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 PRRC1Q96M27 445 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 PTCHD1Q96NR3 888 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 LMAN1LQ9HAT1 526 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 CCDC187A0A096LP49 1063 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 TEX13DA0A0J9YY54 714 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3BA6NDS4 549 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 SIAH2O43255 324 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 SCAF4O95104 1147 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3HP0C7X1 549 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 TRGC1P0CF51 173 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 PFN3P60673 137 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 RHEBQ15382 184 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 TBC1D3GQ6DHY5 549 aa10.99□□□□□ -0.65
LIMCH1-213ENST00000511496 TMPRSS12Q86WS5 348 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms