RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SLC1A3P43003 542 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 PRICKLE2Q7Z3G6 844 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 ENTHD1Q8IYW4 607 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 DNAJC5GQ8N7S2 189 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 RAB3CQ96E17 227 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 TIMD4Q96H15 378 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 SLC25A31Q9H0C2 315 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 TMEM38AQ9H6F2 299 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 TRPM3Q9HCF6 1732 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-215ENST00000496447 OR6C76A6NM76 312 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 MKRN2OSH3BPM6 223 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 KIR2DL3P43628 341 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 DAPP51397 102 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 RPS23P62266 143 aaKnown RBP12.08□□□□□ -0.48
PTPRF-215ENST00000496447 PPIAP62937 165 aaKnown RBP12.08□□□□□ -0.48
PTPRF-215ENST00000496447 SMN1Q16637 294 aaKnown RBP12.08□□□□□ -0.48
PTPRF-215ENST00000496447 DUSP5Q16690 384 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 SYT13Q7L8C5 426 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 CPEB2Q7Z5Q1 589 aaKnown RBP12.08□□□□□ -0.48
PTPRF-215ENST00000496447 ZNF679Q8IYX0 411 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 BPIFB2Q8N4F0 458 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 OR6T1Q8NGN1 323 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 ZNF582Q96NG8 517 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-215ENST00000496447 NEURL2Q9BR09 285 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 SGPP1Q9BX95 441 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 LANCL2Q9NS86 450 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 A0A1W2PPV4 95 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 ZNF705GA8MUZ8 300 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-215ENST00000496447 DSCR3O14972 297 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 ZNF254O75437 659 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 GSTP1P09211 210 aaKnown RBP12.08□□□□□ -0.48
PTPRF-215ENST00000496447 IL3RAP26951 378 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 DUSP7Q16829 419 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 SFRP5Q5T4F7 317 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 KCNG3Q8TAE7 436 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 PIP5K1CO60331 668 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 FPR3P25089 353 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 SNCAP37840 140 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 GRB2P62993 217 aaKnown RBP12.08□□□□□ -0.48
PTPRF-215ENST00000496447 SLC10A1Q14973 349 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 GLYR1Q49A26 553 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-215ENST00000496447 TMEM71Q6P5X7 295 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 ALKAL2Q6UX46 152 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 SARAFQ96BY9 339 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 RASD2Q96D21 266 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 NOX3Q9HBY0 568 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 DUSP22Q9NRW4 184 aa12.08□□□□□ -0.48
PTPRF-215ENST00000496447 NRAPQ86VF7 1730 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 CCDC163A0A0D9SF12 145 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 NCR1O76036 304 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 KCNK2O95069 426 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 SSTP61278 116 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 ACTBL2Q562R1 376 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 OR6V1Q8N148 313 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 SCCPDHQ8NBX0 429 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 LIPHQ8WWY8 451 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 TMEM106AQ96A25 262 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 TRIB1Q96RU8 372 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 GSX2Q9BZM3 304 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 SEMA4CQ9C0C4 833 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 FKRPQ9H9S5 495 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 PDFQ9HBH1 243 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 C19orf53Q9UNZ5 99 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-215ENST00000496447 POM121CA8CG34 1229 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 H0YIG0 161 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 GRPP07492 148 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 HOXB5P09067 269 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 NFYAP23511 347 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-215ENST00000496447 GIFP27352 417 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 BLVRBP30043 206 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-215ENST00000496447 IDH3GP51553 393 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-215ENST00000496447 MEP1BQ16820 701 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 Q499Y3 187 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 SYT6Q5T7P8 510 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-215ENST00000496447 PXT1Q8NFP0 134 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 C11orf40Q8WZ69 217 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 RPL3LQ92901 407 aaKnown RBP12.07□□□□□ -0.48
PTPRF-215ENST00000496447 CHRNA9Q9UGM1 479 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 MAST2Q6P0Q8 1798 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 SOCS6O14544 535 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 TUSC2O75896 110 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 CD22P20273 847 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 UBL7Q96S82 380 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-215ENST00000496447 METTL17Q9H7H0 456 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-215ENST00000496447 HOXA1P49639 335 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-215ENST00000496447 HYAL1Q12794 435 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 SLC46A3Q7Z3Q1 461 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 DCXRQ7Z4W1 244 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 SLC51BQ86UW2 128 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 SCARB1Q8WTV0 552 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 GIMAP1Q8WWP7 306 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 PRR14Q9BWN1 585 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 NRIP3Q9NQ35 241 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 TUBG2Q9NRH3 451 aa12.07□□□□□ -0.48
PTPRF-215ENST00000496447 A0A0U1RQK1 487 aa12.06□□□□□ -0.48
PTPRF-215ENST00000496447 GABRA5P31644 462 aa12.06□□□□□ -0.48
PTPRF-215ENST00000496447 ILKQ13418 452 aa12.06□□□□□ -0.48
PTPRF-215ENST00000496447 HES1Q14469 280 aa12.06□□□□□ -0.48
PTPRF-215ENST00000496447 NUMA1Q14980 2115 aa12.06□□□□□ -0.48
PTPRF-215ENST00000496447 OR52W1Q6IF63 320 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms