RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 IGHV3-64DA0A0J9YX35 117 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 H3BNH8 94 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 LAD1O00515 517 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 PES1O00541 588 aaKnown RBP1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 PEX7O00628 323 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 PPP1R2P9O14990 202 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 SOX15O60248 233 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 EIF3GO75821 320 aaKnown RBP eCLIP1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 CIB2O75838 187 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 IGLV2-23P01705 113 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 FGGP02679 453 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 IGHV3-43DP0DP04 118 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF43P17038 809 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 TNNI1P19237 187 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 CNR1P21554 472 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 NMUP48645 174 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 CCR8P51685 355 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 UGT2B15P54855 530 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 RPS21P63220 83 aaKnown RBP1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF92Q03936 586 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 PPP1R7Q15435 360 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 TMEM183BQ1AE95 376 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 RSPO1Q2MKA7 263 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 VPS26BQ4G0F5 336 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 LINC00173Q6ZV60 143 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 C6orf120Q7Z4R8 191 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 CAMK2N1Q7Z7J9 78 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 TMEM183AQ8IXX5 376 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 LYPD1Q8N2G4 141 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 MS4A15Q8N5U1 240 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 CCDC54Q8NEL0 328 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 SPATA4Q8NEY3 305 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 B3GNT7Q8NFL0 401 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 OR51G1Q8NGK1 321 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 RAB3IL1Q8TBN0 382 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 DTX3LQ8TDB6 740 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 GIMAP1Q8WWP7 306 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 AURKBQ96GD4 344 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 CCDC77Q9BR77 488 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 NUP58Q9BVL2 599 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 CWH43Q9H720 699 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 SLCO1B3Q9NPD5 702 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 DMAP1Q9NPF5 467 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 CTPS2Q9NRF8 586 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF226Q9NYT6 803 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 STOX2Q9P2F5 926 aaPredicted RBP1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 PCYOX1Q9UHG3 505 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 GNPTGQ9UJJ9 305 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 NUP50Q9UKX7 468 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 GAKO14976 1311 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 MAP3K15Q6ZN16 1313 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 CEMIPQ8WUJ3 1361 aa1.83□□□□□ -2.12
CCDC88A-212ENST00000474059 WDR62O43379 1518 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 PRSS37A4D1T9 235 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 DLGAP1O14490 977 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 RNF13O43567 381 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 SS18L1O75177 396 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 ERLIN1O75477 346 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 SUPT3HO75486 399 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 SLC25A27O95847 323 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 PNMA6AP0CW24 399 aaPredicted RBP1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF30P17039 623 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 CDKN1BP46527 198 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 RFX3P48380 749 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 RORCP51449 518 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 PRMT2P55345 433 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 BEX3Q00994 111 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 SMARCB1Q12824 385 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 SRSF5Q13243 272 aaKnown RBP1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 ZBED5Q49AG3 693 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 PIGGQ5H8A4 983 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 TMEM255AQ5JRV8 349 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 VAX1Q5SQQ9 334 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 SASS6Q6UVJ0 657 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 Q6ZSR3 168 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 TMEM135Q86UB9 458 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 ZNF786Q8N393 782 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 OR1S2Q8NGQ3 325 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 GPR151Q8TDV0 419 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 GEMIN6Q8WXD5 167 aaKnown RBP1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 SRSF12Q8WXF0 261 aaKnown RBP1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 PIBF1Q8WXW3 757 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 TMEM54Q969K7 222 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 DNAJC19Q96DA6 116 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 ASB9Q96DX5 294 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 FAM210BQ96KR6 192 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 PLIN2Q99541 437 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 ATP5SQ99766 215 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 ECSITQ9BQ95 431 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 CENPKQ9BS16 269 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 OSBPL10Q9BXB5 764 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 GABARAPL3Q9BY60 117 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 CDC42EP4Q9H3Q1 356 aaKnown RBP1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 WSB1Q9Y6I7 421 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 NFASCO94856 1347 aa1.82□□□□□ -2.12
CCDC88A-212ENST00000474059 GTF3C1Q12789 2109 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 IGLV4-60A0A075B6I1 120 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 PLAC8L1A1L4L8 177 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 CTAGE15A4D2H0 777 aa1.81□□□□□ -2.12
CCDC88A-212ENST00000474059 SERPINE3A8MV23 424 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms