RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ABCD2Q9UBJ2 740 aa10.41□□□□□ -0.74
USP40-210ENST00000454354 HIF3AQ9Y2N7 669 aa10.41□□□□□ -0.74
USP40-210ENST00000454354 MED31Q9Y3C7 131 aa10.41□□□□□ -0.74
USP40-210ENST00000454354 TMEM129A0AVI4 362 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 hCG_2039718K7EN88 272 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 CXCR6O00574 342 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 NDUFAB1O14561 156 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 CRLF1O75462 422 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 LY6HO94772 140 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 RAB36O95755 333 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 IFNW1P05000 195 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 F13BP05160 661 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 OR8G3PP0DMU2 310 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 AQP2P41181 271 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 GIPRP48546 466 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 PTDSS1P48651 473 aaKnown RBP10.4□□□□□ -0.74
USP40-210ENST00000454354 GSK3BP49841 420 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 PDLIM4P50479 330 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 DAP3P51398 398 aaKnown RBP10.4□□□□□ -0.74
USP40-210ENST00000454354 RAB1AP62820 205 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 VLDLRP98155 873 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 RUNX1T1Q06455 604 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 PIGFQ07326 219 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 FXNQ16595 210 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 TMEM249Q2WGJ8 235 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 C10orf128Q5T292 105 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 VHLLQ6RSH7 139 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 VTCN1Q7Z7D3 282 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 DPPA2Q7Z7J5 298 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 PRIMA1Q86XR5 153 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 SKA3Q8IX90 412 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 MOSPD2Q8NHP6 518 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 GEMIN6Q8WXD5 167 aaKnown RBP10.4□□□□□ -0.74
USP40-210ENST00000454354 DOK1Q99704 481 aa10.4□□□□□ -0.74
USP40-210ENST00000454354 STX18Q9P2W9 335 aaKnown RBP10.4□□□□□ -0.74
USP40-210ENST00000454354 VSTM5A8MXK1 200 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 MCIDASD6RGH6 385 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 GPRIN2O60269 458 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 PIP5K1CO60331 668 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 TRMUO75648 421 aaKnown RBP10.39□□□□□ -0.75
USP40-210ENST00000454354 PRSS23O95084 383 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 FARS2O95363 451 aaKnown RBP10.39□□□□□ -0.75
USP40-210ENST00000454354 QDPRP09417 244 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 ACADSP16219 412 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 IFNA8P32881 189 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 EVX1P49640 407 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 NUDT2P50583 147 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 CLRN1P58418 232 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 RPS23P62266 143 aaKnown RBP10.39□□□□□ -0.75
USP40-210ENST00000454354 TAF11Q15544 211 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 MSMPQ1L6U9 139 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 IFI44LQ53G44 452 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 ARMC4Q5T2S8 1044 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 KRT80Q6KB66 452 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 ZNF584Q8IVC4 421 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 SVOPLQ8N434 492 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 ANKS4BQ8N8V4 417 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 FGFBP3Q8TAT2 258 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 MCHR2Q969V1 340 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 MRPL24Q96A35 216 aaKnown RBP10.39□□□□□ -0.75
USP40-210ENST00000454354 NMD3Q96D46 503 aaKnown RBP10.39□□□□□ -0.75
USP40-210ENST00000454354 BPIFA2Q96DR5 249 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 HSH2DQ96JZ2 352 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 ZNF347Q96SE7 839 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 VRK1Q99986 396 aaPredicted RBP10.39□□□□□ -0.75
USP40-210ENST00000454354 RAB1BQ9H0U4 201 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 TXNIPQ9H3M7 391 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 SMURF2Q9HAU4 748 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 CMAHPQ9Y471 501 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 SPEF1Q9Y4P9 236 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 SNX13Q9Y5W8 968 aa10.39□□□□□ -0.75
USP40-210ENST00000454354 FBN1P35555 2871 aaKnown RBP10.38□□□□□ -0.75
USP40-210ENST00000454354 LOC390937A0A1W2PQ73 354 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 FFAR1O14842 300 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 MGRN1O60291 552 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 ZNF682O95780 498 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 IGHMP01871 453 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 SERPINA5P05154 406 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 IGFBP1P08833 259 aaPredicted RBP10.38□□□□□ -0.75
USP40-210ENST00000454354 IFI30P13284 250 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 FUT4P22083 530 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 USF1P22415 310 aaPredicted RBP10.38□□□□□ -0.75
USP40-210ENST00000454354 PRDX6P30041 224 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 GLRXP35754 106 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 ZNF84P51523 738 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 LSM11P83369 360 aaKnown RBP eCLIP10.38□□□□□ -0.75
USP40-210ENST00000454354 PRKCDQ05655 676 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 FHL1Q13642 323 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 RAB39AQ14964 217 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 TRAM2Q15035 370 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 ANKDD1AQ495B1 522 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 C6orf52Q5T4I8 152 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 NRMQ8IXM6 262 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 CDK20Q8IZL9 346 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 OR4K5Q8NGD3 323 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 NEU4Q8WWR8 484 aaPredicted RBP10.38□□□□□ -0.75
USP40-210ENST00000454354 ACOT11Q8WXI4 607 aaPredicted RBP10.38□□□□□ -0.75
USP40-210ENST00000454354 CMTM5Q96DZ9 223 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 KCNK17Q96T54 332 aa10.38□□□□□ -0.75
USP40-210ENST00000454354 SH3GL3Q99963 347 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms