RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 MYOZ1Q9NP98 299 aaPredicted RBP16.75■□□□□ 0.27
USP40-207ENST00000450940 INIPQ9NRY2 104 aa16.75■□□□□ 0.27
USP40-207ENST00000450940 hCG_2039718K7EN88 272 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 SERPINA5P05154 406 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 F13BP05160 661 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 IGFBP1P08833 259 aaPredicted RBP16.74■□□□□ 0.27
USP40-207ENST00000450940 PTDSS1P48651 473 aaKnown RBP16.74■□□□□ 0.27
USP40-207ENST00000450940 EVX1P49640 407 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 PDLIM4P50479 330 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 SNTB2Q13425 540 aaKnown RBP16.74■□□□□ 0.27
USP40-207ENST00000450940 FXNQ16595 210 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 ARMC4Q5T2S8 1044 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 HDDC2Q7Z4H3 204 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 DPPA2Q7Z7J5 298 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 ANKS4BQ8N8V4 417 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 MOSPD2Q8NHP6 518 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 MCHR2Q969V1 340 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 VRK1Q99986 396 aaPredicted RBP16.74■□□□□ 0.27
USP40-207ENST00000450940 MYLK2Q9H1R3 596 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 MAN2C1Q9NTJ4 1040 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 ADAM21Q9UKJ8 722 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 HIF3AQ9Y2N7 669 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 SPEF1Q9Y4P9 236 aa16.74■□□□□ 0.27
USP40-207ENST00000450940 LOC390937A0A1W2PQ73 354 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 CXCR6O00574 342 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 NDUFAB1O14561 156 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 FFAR1O14842 300 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 MGRN1O60291 552 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 TRMUO75648 421 aaKnown RBP16.73■□□□□ 0.27
USP40-207ENST00000450940 RAB36O95755 333 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 ACADSP16219 412 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 FUT4P22083 530 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 IFNA8P32881 189 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 GLRXP35754 106 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 GSK3BP49841 420 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 DAP3P51398 398 aaKnown RBP16.73■□□□□ 0.27
USP40-207ENST00000450940 SLC7A2P52569 658 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 LAPTM4AQ15012 233 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 C10orf128Q5T292 105 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 KRT80Q6KB66 452 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 CBLL1Q75N03 491 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 SPATA21Q7Z572 469 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 VTCN1Q7Z7D3 282 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 ZNF584Q8IVC4 421 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 OFCC1Q8IZS5 231 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 SVOPLQ8N434 492 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 NMD3Q96D46 503 aaKnown RBP16.73■□□□□ 0.27
USP40-207ENST00000450940 ZNF347Q96SE7 839 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 RAB1BQ9H0U4 201 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 STX18Q9P2W9 335 aaKnown RBP16.73■□□□□ 0.27
USP40-207ENST00000450940 CMAHPQ9Y471 501 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 SNX13Q9Y5W8 968 aa16.73■□□□□ 0.27
USP40-207ENST00000450940 RTTNQ86VV8 2226 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 PIP5K1CO60331 668 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 FARS2O95363 451 aaKnown RBP16.72■□□□□ 0.27
USP40-207ENST00000450940 IFNW1P05000 195 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 PATE4P0C8F1 98 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 USF1P22415 310 aaPredicted RBP16.72■□□□□ 0.27
USP40-207ENST00000450940 CLRN1P58418 232 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 LSM11P83369 360 aaKnown RBP eCLIP16.72■□□□□ 0.27
USP40-207ENST00000450940 RAB39AQ14964 217 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 TAF11Q15544 211 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 MSMPQ1L6U9 139 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 HIPK1Q86Z02 1210 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 NOXO1Q8NFA2 376 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 NEU4Q8WWR8 484 aaPredicted RBP16.72■□□□□ 0.27
USP40-207ENST00000450940 GEMIN6Q8WXD5 167 aaKnown RBP16.72■□□□□ 0.27
USP40-207ENST00000450940 MRPL24Q96A35 216 aaKnown RBP16.72■□□□□ 0.27
USP40-207ENST00000450940 BPIFA2Q96DR5 249 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 SH3GL3Q99963 347 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 TXNIPQ9H3M7 391 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 SMURF2Q9HAU4 748 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 YAE1D1Q9NRH1 226 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 ABCD2Q9UBJ2 740 aa16.72■□□□□ 0.27
USP40-207ENST00000450940 A8MV72 311 aaPredicted RBP16.71■□□□□ 0.27
USP40-207ENST00000450940 MCIDASD6RGH6 385 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 PRSS23O95084 383 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 NR4A2P43354 598 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 ZNF84P51523 738 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 PRKCDQ05655 676 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 FHL1Q13642 323 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 TRAM2Q15035 370 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 ANKDD1AQ495B1 522 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 CDK20Q8IZL9 346 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 RNF113BQ8IZP6 322 aaKnown RBP16.71■□□□□ 0.27
USP40-207ENST00000450940 OR4K5Q8NGD3 323 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 CMTM5Q96DZ9 223 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 FOXN4Q96NZ1 517 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 ELAC2Q9BQ52 826 aaKnown RBP16.71■□□□□ 0.27
USP40-207ENST00000450940 FNDC11Q9BVV2 318 aa16.71■□□□□ 0.27
USP40-207ENST00000450940 IGHMP01871 453 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 IFI30P13284 250 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 GIFP27352 417 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 PRDX6P30041 224 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 NUDT2P50583 147 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 SEC24CP53992 1094 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 MRPS34P82930 218 aaKnown RBP16.7■□□□□ 0.26
USP40-207ENST00000450940 MYBPC1Q00872 1141 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 SLC36A2Q495M3 483 aa16.7■□□□□ 0.26
USP40-207ENST00000450940 IFI44LQ53G44 452 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms