RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 UTP4Q969X6 686 aaKnown RBP12.55□□□□□ -0.4
COL3A1-203ENST00000450867 SLCO4A1Q96BD0 722 aa12.55□□□□□ -0.4
COL3A1-203ENST00000450867 FOXB1Q99853 325 aa12.55□□□□□ -0.4
COL3A1-203ENST00000450867 KATNB1Q9BVA0 655 aa12.55□□□□□ -0.4
COL3A1-203ENST00000450867 YY1AP1Q9H869 796 aa12.55□□□□□ -0.4
COL3A1-203ENST00000450867 REEP1Q9H902 201 aa12.55□□□□□ -0.4
COL3A1-203ENST00000450867 ZNF346Q9UL40 294 aaKnown RBP12.55□□□□□ -0.4
COL3A1-203ENST00000450867 PRRC2AP48634 2157 aaKnown RBP12.54□□□□□ -0.4
COL3A1-203ENST00000450867 MGRN1O60291 552 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 FKBP6O75344 327 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 CST1P01037 141 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 IGKV3-15P01624 115 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 IGLV1-44P01699 117 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 QDPRP09417 244 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 CDH2P19022 906 aaPredicted RBP12.54□□□□□ -0.4
COL3A1-203ENST00000450867 PTAFRP25105 342 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 CLRN1P58418 232 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 CBX1P83916 185 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 MICAQ29983 383 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 FBXW10Q5XX13 1052 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 KLHL17Q6TDP4 642 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 KLHL24Q6TFL4 600 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 TMEM108Q6UXF1 575 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 PAMR1Q6UXH9 720 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 CD300LDQ6UXZ3 194 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 DPY19L2P2Q6ZN68 376 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 ZNF704Q6ZNC4 412 aaPredicted RBP12.54□□□□□ -0.4
COL3A1-203ENST00000450867 ZNF620Q6ZNG0 422 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 CDH24Q86UP0 819 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 IGFN1Q86VF2 1251 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 GNPDA2Q8TDQ7 276 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 NINJ1Q92982 152 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 MCHR2Q969V1 340 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 RADILQ96JH8 1075 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 DGCR6LQ9BY27 220 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 DENND2DQ9H6A0 471 aaPredicted RBP12.54□□□□□ -0.4
COL3A1-203ENST00000450867 TMEM38BQ9NVV0 291 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 B3GNT2Q9NY97 397 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.54□□□□□ -0.4
COL3A1-203ENST00000450867 MGAT4BQ9UQ53 548 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 POFUT2Q9Y2G5 429 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 ADAM18Q9Y3Q7 739 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 SAMHD1Q9Y3Z3 626 aaKnown RBP12.54□□□□□ -0.4
COL3A1-203ENST00000450867 RNF115Q9Y4L5 304 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 RTTNQ86VV8 2226 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 ARID1AO14497 2285 aa12.54□□□□□ -0.4
COL3A1-203ENST00000450867 A0A1W2PR80 420 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 IMPA2O14732 288 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 ARPC3O15145 178 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 ENTPD5O75356 428 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 CCNB2O95067 398 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 CD3EP07766 207 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 CD40P25942 277 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 SDHAP31040 664 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 RPL4P36578 427 aaKnown RBP12.53□□□□□ -0.4
COL3A1-203ENST00000450867 ACVR1BP36896 505 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 UBE2NP61088 152 aaKnown RBP12.53□□□□□ -0.4
COL3A1-203ENST00000450867 ERVK-25P63136 954 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 TOP3AQ13472 1001 aaPredicted RBP12.53□□□□□ -0.4
COL3A1-203ENST00000450867 RFX4Q33E94 735 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 THEM4Q5T1C6 240 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 RPL13AP3Q6NVV1 102 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 SLC25A47Q6Q0C1 308 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 ZNF813Q6ZN06 617 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 FOXL2NBQ6ZUU3 175 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 CLDN22Q8N7P3 220 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 SYT14Q8NB59 555 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 OR9Q2Q8NGE9 314 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 LILRB1Q8NHL6 650 aaPredicted RBP12.53□□□□□ -0.4
COL3A1-203ENST00000450867 FANK1Q8TC84 345 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 IGFBPL1Q8WX77 278 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 Q96M85 177 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 OR52D1Q9H346 318 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 ARMC1Q9NVT9 282 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 IL20Q9NYY1 176 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 ZNF224Q9NZL3 707 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 DNAJB9Q9UBS3 223 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 ST6GALNAC2Q9UJ37 374 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 EDARQ9UNE0 448 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 UGT2A1Q9Y4X1 527 aa12.53□□□□□ -0.4
COL3A1-203ENST00000450867 A0A096LPE4 126 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 A0A1W2PPZ6 126 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 ZNF503-AS2A6NEH8 195 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 SHISA9B4DS77 424 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 PLAUP00749 431 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 GASTP01350 101 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 B4GALT1P15291 398 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 CBR1P16152 277 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 ZNF83P51522 516 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 MRPS34P82930 218 aaKnown RBP12.52□□□□□ -0.41
COL3A1-203ENST00000450867 CCNIQ14094 377 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 MESTQ5EB52 335 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 C20orf204Q6ZNR8 217 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 RASSF6Q6ZTQ3 369 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 YTHDF3Q7Z739 585 aaKnown RBP12.52□□□□□ -0.41
COL3A1-203ENST00000450867 ADCK1Q86TW2 530 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 NRGNQ92686 78 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 MBD6Q96DN6 1003 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 ZNF75AQ96N20 296 aa12.52□□□□□ -0.41
COL3A1-203ENST00000450867 ZNF570Q96NI8 536 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms