RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 FANK1Q8TC84 345 aa16.3■□□□□ 0.2
PTCD3-204ENST00000418628 MCHR2Q969V1 340 aa16.3■□□□□ 0.2
PTCD3-204ENST00000418628 FOXB1Q99853 325 aa16.3■□□□□ 0.2
PTCD3-204ENST00000418628 DGCR6LQ9BY27 220 aa16.3■□□□□ 0.2
PTCD3-204ENST00000418628 NGBQ9NPG2 151 aa16.3■□□□□ 0.2
PTCD3-204ENST00000418628 IGKV1D-43A0A0B4J1Z2 117 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 A0A1W2PR80 420 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 DHHO43323 396 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 CCNB2O95067 398 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 APEHP13798 732 aaKnown RBP16.29■□□□□ 0.2
PTCD3-204ENST00000418628 CDH2P19022 906 aaPredicted RBP16.29■□□□□ 0.2
PTCD3-204ENST00000418628 PAX7P23759 505 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 BSPH1Q075Z2 132 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 TOP3AQ13472 1001 aaPredicted RBP16.29■□□□□ 0.2
PTCD3-204ENST00000418628 C3orf36Q3SXR2 165 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 NRN1LQ496H8 165 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 C1orf146Q5VVC0 180 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 SMARCD3Q6STE5 483 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 DPY19L2P2Q6ZN68 376 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 TMEM179BQ7Z7N9 219 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 FAM169BQ8N8A8 192 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 GNPDA2Q8TDQ7 276 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 OR52D1Q9H346 318 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 UGT2A1Q9Y4X1 527 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 MAGED1Q9Y5V3 778 aaPredicted RBP16.29■□□□□ 0.2
PTCD3-204ENST00000418628 U3KQV3 271 aa16.29■□□□□ 0.2
PTCD3-204ENST00000418628 A6NIZ1 184 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 SEC14L2O76054 403 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 IGKV3-15P01624 115 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 IGLV1-44P01699 117 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 TP53P04637 393 aaPredicted RBP16.28■□□□□ 0.2
PTCD3-204ENST00000418628 QDPRP09417 244 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 SDHAP31040 664 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 ACVR1BP36896 505 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 ERFP50548 548 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 IST1P53990 364 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 CLRN1P58418 232 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 RAP1BP61224 184 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 RAP1AP62834 184 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 ERVK-25P63136 954 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 RFX4Q33E94 735 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 ADAM5Q6NVV9 412 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 SLC25A47Q6Q0C1 308 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 FOXL2NBQ6ZUU3 175 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 YTHDF3Q7Z739 585 aaKnown RBP16.28■□□□□ 0.2
PTCD3-204ENST00000418628 CLDN22Q8N7P3 220 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 Q96M85 177 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 ZNF75AQ96N20 296 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 NDEL1Q9GZM8 345 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 ESRP2Q9H6T0 727 aaKnown RBP16.28■□□□□ 0.2
PTCD3-204ENST00000418628 YY1AP1Q9H869 796 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 NTN4Q9HB63 628 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 ARMC1Q9NVT9 282 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 TMEM38BQ9NVV0 291 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 B3GNT2Q9NY97 397 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 IL20Q9NYY1 176 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 DNAJB9Q9UBS3 223 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 CDH10Q9Y6N8 788 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 OTOGQ6ZRI0 2925 aa16.28■□□□□ 0.2
PTCD3-204ENST00000418628 A0A096LPE4 126 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 A0A1W2PPZ6 126 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 ARPC3O15145 178 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 WNT11O96014 354 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 PLAUP00749 431 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 GASTP01350 101 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 NR2C1P13056 603 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 B4GALT1P15291 398 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 HOXC12P31275 282 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 RPL4P36578 427 aaKnown RBP16.27■□□□□ 0.2
PTCD3-204ENST00000418628 FMODQ06828 376 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 GPR139Q6DWJ6 353 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 KLHL24Q6TFL4 600 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 PAMR1Q6UXH9 720 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 CD300LDQ6UXZ3 194 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 ZNF813Q6ZN06 617 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 ZNF704Q6ZNC4 412 aaPredicted RBP16.27■□□□□ 0.2
PTCD3-204ENST00000418628 RASSF6Q6ZTQ3 369 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 CCDC36Q8IYA8 594 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 SYT14Q8NB59 555 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 AQP11Q8NBQ7 271 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 OR10G2Q8NGC3 310 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 LILRB1Q8NHL6 650 aaPredicted RBP16.27■□□□□ 0.2
PTCD3-204ENST00000418628 FNDC8Q8TC99 324 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 NRGNQ92686 78 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 ZNF570Q96NI8 536 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 NOX3Q9HBY0 568 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 IL20RAQ9UHF4 553 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 RNF115Q9Y4L5 304 aa16.27■□□□□ 0.2
PTCD3-204ENST00000418628 USF3Q68DE3 2245 aa16.26■□□□□ 0.19
PTCD3-204ENST00000418628 SHISA9B4DS77 424 aa16.26■□□□□ 0.19
PTCD3-204ENST00000418628 AHCYL1O43865 530 aa16.26■□□□□ 0.19
PTCD3-204ENST00000418628 SLC2A10O95528 541 aa16.26■□□□□ 0.19
PTCD3-204ENST00000418628 PTAFRP25105 342 aa16.26■□□□□ 0.19
PTCD3-204ENST00000418628 CD40P25942 277 aa16.26■□□□□ 0.19
PTCD3-204ENST00000418628 SLC6A6P31641 620 aa16.26■□□□□ 0.19
PTCD3-204ENST00000418628 ACTR3P61158 418 aa16.26■□□□□ 0.19
PTCD3-204ENST00000418628 MYBPC1Q00872 1141 aa16.26■□□□□ 0.19
PTCD3-204ENST00000418628 KRR1Q13601 381 aaKnown RBP16.26■□□□□ 0.19
PTCD3-204ENST00000418628 THEM4Q5T1C6 240 aa16.26■□□□□ 0.19
PTCD3-204ENST00000418628 RPL13AP3Q6NVV1 102 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms