RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RNF122Q9H9V4 155 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 CALHM2Q9HA72 323 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 SRA1Q9HD15 236 aaKnown RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 CHCHD3Q9NX63 227 aaKnown RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 WARS2Q9UGM6 360 aaKnown RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 MOKQ9UQ07 419 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 EMC9Q9Y3B6 208 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 FLVCR1Q9Y5Y0 555 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 IGKV3D-15A0A087WSY6 115 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 ZNF716A6NP11 495 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 CYSRT1A8MQ03 144 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 PTGES3LE9PB15 166 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 H7C1C5 153 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 SLC16A7O60669 478 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 KHDRBS3O75525 346 aaKnown RBP12.63□□□□□ -0.39
SKA1-202ENST00000398452 WBP4O75554 376 aaKnown RBP12.63□□□□□ -0.39
SKA1-202ENST00000398452 HLA-DQA2P01906 255 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 YES1P07947 543 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 GABRB1P18505 474 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 KLK2P20151 261 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 HTR1FP30939 366 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 CDKN2AP42771 156 aaKnown RBP12.63□□□□□ -0.39
SKA1-202ENST00000398452 NUDT6P53370 316 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 LCN6P62502 163 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 POU4F2Q12837 409 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 APOFQ13790 326 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 EIF2S3LQ2VIR3 472 aaKnown RBP12.63□□□□□ -0.39
SKA1-202ENST00000398452 THEM4Q5T1C6 240 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 C1orf185Q5T7R7 199 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 ZNF100Q8IYN0 542 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 SYT14Q8NB59 555 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 NPEPL1Q8NDH3 523 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 OR6K6Q8NGW6 343 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 APH1BQ8WW43 257 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 TMEM45BQ96B21 275 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 GMPPAQ96IJ6 420 aaPredicted RBP12.63□□□□□ -0.39
SKA1-202ENST00000398452 ZNF385AQ96PM9 386 aaKnown RBP12.63□□□□□ -0.39
SKA1-202ENST00000398452 MYCBPQ99417 103 aaPredicted RBP12.63□□□□□ -0.39
SKA1-202ENST00000398452 CCDC90BQ9GZT6 254 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 MED20Q9H944 212 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 VCX3AQ9NNX9 186 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 PLCXD1Q9NUJ7 323 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 VSX1Q9NZR4 365 aaPredicted RBP12.63□□□□□ -0.39
SKA1-202ENST00000398452 AASSQ9UDR5 926 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 PCDHGB1Q9Y5G3 927 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 FKBP7Q9Y680 259 aa12.63□□□□□ -0.39
SKA1-202ENST00000398452 MED12Q93074 2177 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 SLC22A23A1A5C7 686 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 OR6C68A6NDL8 312 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 CD8B2A6NJW9 211 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 XPNPEP2O43895 674 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 AQP8O94778 261 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 SPI1P17947 270 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 MTNR1AP48039 350 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 ZNF84P51523 738 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 TDGF1P3P51864 188 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 GABARAPL2P60520 117 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 EFNB1P98172 346 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 KCTD21Q4G0X4 260 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 ACSF3Q4G176 576 aaPredicted RBP12.62□□□□□ -0.39
SKA1-202ENST00000398452 AADACL4Q5VUY2 407 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 NSUN5P2Q63ZY6 315 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 B3GNT6Q6ZMB0 384 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 ABHD12BQ7Z5M8 362 aaPredicted RBP12.62□□□□□ -0.39
SKA1-202ENST00000398452 BCDIN3DQ7Z5W3 292 aaKnown RBP12.62□□□□□ -0.39
SKA1-202ENST00000398452 TUSC5Q8IXB3 177 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 APH1AQ96BI3 265 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 ZNF775Q96BV0 537 aaPredicted RBP12.62□□□□□ -0.39
SKA1-202ENST00000398452 RNFT2Q96EX2 444 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 COPS4Q9BT78 406 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 ULBP2Q9BZM5 246 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 BCO1Q9HAY6 547 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 AMBNQ9NP70 447 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 GLTPQ9NZD2 209 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 CNOT2Q9NZN8 540 aaKnown RBP12.62□□□□□ -0.39
SKA1-202ENST00000398452 CLCF1Q9UBD9 225 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 UPB1Q9UBR1 384 aa12.62□□□□□ -0.39
SKA1-202ENST00000398452 RP1L1Q8IWN7 2480 aaPredicted RBP12.62□□□□□ -0.39
SKA1-202ENST00000398452 ZNF407Q9C0G0 2248 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 RGS10O43665 173 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 SLC19A2O60779 497 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 GLCEO94923 617 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 FADS2O95864 444 aaKnown RBP12.61□□□□□ -0.39
SKA1-202ENST00000398452 IL2RAP01589 272 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 GYPBP06028 91 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 LYNP07948 512 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 DBTP11182 482 aaKnown RBP12.61□□□□□ -0.39
SKA1-202ENST00000398452 MYL12AP19105 171 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 CRHBPP24387 322 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 GLO1Q04760 184 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 ZNF91Q05481 1191 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 RAB40BQ12829 278 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 SMN1Q16637 294 aaKnown RBP12.61□□□□□ -0.39
SKA1-202ENST00000398452 PRR30Q53SZ7 412 aaPredicted RBP12.61□□□□□ -0.39
SKA1-202ENST00000398452 ZNF362Q5T0B9 420 aaPredicted RBP12.61□□□□□ -0.39
SKA1-202ENST00000398452 RPTNQ6XPR3 784 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 AHSA2Q719I0 299 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 OR10H5Q8NGA6 315 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 PTP4A1Q93096 173 aa12.61□□□□□ -0.39
SKA1-202ENST00000398452 MRPL48Q96GC5 212 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms