RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 CDH20Q9HBT6 801 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 C14orf166Q9Y224 244 aaKnown RBP13.19□□□□□ -0.3
TCOF1-202ENST00000377797 B3GALT5Q9Y2C3 310 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 HTR3BO95264 441 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 PCBD1P61457 104 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 GABREP78334 506 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 SLC22A6Q4U2R8 563 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 HEPHL1Q6MZM0 1159 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 TAAR9Q96RI9 348 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 MMP25Q9NPA2 562 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 OCIAD1Q9NX40 245 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 CCDC187A0A096LP49 1063 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 ALG1L2C9J202 215 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 C4orf51C9J302 202 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 STEAP3Q658P3 488 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 CD300LDQ6UXZ3 194 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 LGALS14Q8TCE9 139 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 TXNIPQ9H3M7 391 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 ZNF442Q9H7R0 627 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 CALHM2Q9HA72 323 aa13.19□□□□□ -0.3
TCOF1-202ENST00000377797 PCP4L1A6NKN8 68 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 C4orf47A7E2U8 309 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 GPR171O14626 319 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 HYAL3O43820 417 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-202ENST00000377797 CCL4P13236 92 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 HTR5AP47898 357 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 LSM11P83369 360 aaKnown RBP eCLIP13.18□□□□□ -0.3
TCOF1-202ENST00000377797 FIP1L1Q6UN15 594 aaKnown RBP13.18□□□□□ -0.3
TCOF1-202ENST00000377797 UNQ6126/PRO20091Q6UXV3 157 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 TMEM178AQ8NBL3 297 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 OR10G3Q8NGC4 313 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 TMEM43Q9BTV4 400 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 HCAR1Q9BXC0 346 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 PFDN2Q9UHV9 154 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 MEIS3P1A6NDR6 274 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 ARGFXA6NJG6 315 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 D6RAR5 112 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 HERV-K104P61576 105 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 FUT7Q11130 342 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 THSD4Q6ZMP0 1018 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 PRSS42Q7Z5A4 293 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 SLC25A45Q8N413 288 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 OR8D4Q8NGM9 314 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 PHYHIPQ92561 330 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 ZNF768Q9H5H4 540 aaKnown RBP13.18□□□□□ -0.3
TCOF1-202ENST00000377797 APMAPQ9HDC9 416 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 MYOTQ9UBF9 498 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 TMEM184BQ9Y519 407 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-202ENST00000377797 CACNG2Q9Y698 323 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 PRSS37A4D1T9 235 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 P2RY10O00398 339 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 VAMP5O95183 116 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 NTN1O95631 604 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 PAHP00439 452 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 SUMO3P55854 103 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-202ENST00000377797 C6orf183Q5T699 404 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 ZNF431Q8TF32 576 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-202ENST00000377797 OR51B6Q9H340 312 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 ISG20L2Q9H9L3 353 aaKnown RBP13.18□□□□□ -0.3
TCOF1-202ENST00000377797 RFPL3O75679 317 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 IFNA21P01568 189 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 RAB40ALP0C0E4 278 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 SLC2A1P11166 492 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 HTR2AP28223 471 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 EMP3P54852 163 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 METAP1DQ6UB28 335 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-202ENST00000377797 NRARPQ7Z6K4 114 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 GLB1L2Q8IW92 636 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 FAM83FQ8NEG4 500 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-202ENST00000377797 RAB40AQ8WXH6 277 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 SLC25A46Q96AG3 418 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 NIPAL2Q9H841 368 aa13.18□□□□□ -0.3
TCOF1-202ENST00000377797 FAM230AA0A1W2PPH8 454 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 SHISA8B8ZZ34 492 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 RLN2P04090 185 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 ANXA3P12429 323 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 APLNRP35414 380 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 FABP5Q01469 135 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 LINC00299Q6ZSB3 139 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 FOXRED2Q8IWF2 684 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 ZNF565Q8N9K5 539 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 STK35Q8TDR2 534 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 FOXRED1Q96CU9 486 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-202ENST00000377797 ING1Q9UK53 422 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-202ENST00000377797 MEMO1Q9Y316 297 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 ZXDAP98168 799 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 STK11Q15831 433 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 CTF1Q16619 201 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 NKPD1Q17RQ9 610 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 SYS1Q8N2H4 156 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 TCEAL3Q969E4 200 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 IP6K3Q96PC2 410 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 ISYNA1Q9NPH2 558 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 SLC22A11Q9NSA0 550 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 ARHGEF17Q96PE2 2063 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-202ENST00000377797 CREBL2O60519 120 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-202ENST00000377797 GCM2O75603 506 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-202ENST00000377797 TOXO94900 526 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 SRMP19623 302 aa13.17□□□□□ -0.3
TCOF1-202ENST00000377797 SLC37A1P57057 533 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms