RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 GOSR1O95249 250 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 IGHMP01871 453 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 RPSAP08865 295 aaKnown RBP13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 ACADSP16219 412 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 ERVK-25P63136 954 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 TUBA1BP68363 451 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 TUBA4AP68366 448 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 MYBPC1Q00872 1141 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 BEX5Q5H9J7 111 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 LRFN4Q6PJG9 635 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 TUBA1AQ71U36 451 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 P2RY8Q86VZ1 359 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 C17orf78Q8N4C9 275 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 CLDN22Q8N7P3 220 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 MUCL1Q96DR8 90 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 C1QTNF6Q9BXI9 259 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 VCXQ9H320 206 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 REEP1Q9H902 201 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 NTN4Q9HB63 628 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 KRCC1Q9NPI7 259 aaPredicted RBP13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 DNAJB9Q9UBS3 223 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 LRRC42Q9Y546 428 aa13.2□□□□□ -0.3
SMPDL3A-201ENST00000368440 E2F6O75461 281 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 PLAUP00749 431 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 IGHG1P01857 330 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 GSSP48637 474 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 CLRN1P58418 232 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 PRPS1P60891 318 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 RPL27P61353 136 aaKnown RBP13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 HIST3H3Q16695 136 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF770Q6IQ21 691 aaPredicted RBP13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 C1orf94Q6P1W5 598 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 ANKRD16Q6P6B7 361 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 HS3ST5Q8IZT8 346 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF519Q8TB69 540 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 BOD1Q96IK1 185 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 B3GAT2Q9NPZ5 323 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 RAI1Q7Z5J4 1906 aaPredicted RBP13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 CSMD1Q96PZ7 3565 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF503-AS2A6NEH8 195 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 DPRXA6NFQ7 191 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF99A8MXY4 864 aaPredicted RBP13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 NDUFB2O95178 105 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 FPR3P25089 353 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 RPL4P36578 427 aaKnown RBP13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 ACVR1BP36896 505 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF83P51522 516 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 SH3BGRP55822 239 aaPredicted RBP13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 FMODQ06828 376 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 NCMAPQ5T1S8 102 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 FAM122BQ7Z309 247 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 TMEM179BQ7Z7N9 219 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 GNPDA2Q8TDQ7 276 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 HTRA1Q92743 480 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 Q96M85 177 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF570Q96NI8 536 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 KCNK17Q96T54 332 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 PLEKHF2Q9H8W4 249 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 AMDHD2Q9Y303 409 aa13.19□□□□□ -0.3
SMPDL3A-201ENST00000368440 IGKV1D-43A0A0B4J1Z2 117 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 H7C1C5 153 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 EI24O14681 340 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 CCNB2O95067 398 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 GASTP01350 101 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 CD14P08571 375 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 QDPRP09417 244 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 HOXC12P31275 282 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 LCN6P62502 163 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 BSPH1Q075Z2 132 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 KLHL24Q6TFL4 600 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 FANK1Q8TC84 345 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 MAGEE2Q8TD90 523 aaPredicted RBP13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 MCHR2Q969V1 340 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 NMD3Q96D46 503 aaKnown RBP13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 C9orf16Q9BUW7 83 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 OR52D1Q9H346 318 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 POLQO75417 2590 aa13.18□□□□□ -0.3
SMPDL3A-201ENST00000368440 SLC2A10O95528 541 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 B4GALT1P15291 398 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 PRKACGP22612 351 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 IFNGR2P38484 337 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 SPOCK1Q08629 439 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 TSPAN31Q12999 210 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 MICAQ29983 383 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 MESTQ5EB52 335 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 C6orf52Q5T4I8 152 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 SMARCD3Q6STE5 483 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 ZNF813Q6ZN06 617 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 HDDC2Q7Z4H3 204 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 AQP11Q8NBQ7 271 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 RASD2Q96D21 266 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 GPX7Q96SL4 187 aaPredicted RBP13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 FOXB1Q99853 325 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 NRIP3Q9NQ35 241 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 POFUT2Q9Y2G5 429 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 TEX15Q9BXT5 2789 aa13.17□□□□□ -0.3
SMPDL3A-201ENST00000368440 ARPC4-TTLL3A0A0A6YYG9 625 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 G3V2T6 193 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 M0R1B8 84 aa13.16□□□□□ -0.3
SMPDL3A-201ENST00000368440 DHHO43323 396 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms