RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SKA3Q8IX90 412 aa14.12□□□□□ -0.15
LSM1-201ENST00000311351 NUP37Q8NFH4 326 aa14.12□□□□□ -0.15
LSM1-201ENST00000311351 OR4F15Q8NGB8 312 aa14.12□□□□□ -0.15
LSM1-201ENST00000311351 LIPHQ8WWY8 451 aa14.12□□□□□ -0.15
LSM1-201ENST00000311351 NANOS1Q8WY41 292 aaKnown RBP14.12□□□□□ -0.15
LSM1-201ENST00000311351 BPIFA2Q96DR5 249 aa14.12□□□□□ -0.15
LSM1-201ENST00000311351 ZNF75AQ96N20 296 aa14.12□□□□□ -0.15
LSM1-201ENST00000311351 SORCS2Q96PQ0 1159 aa14.12□□□□□ -0.15
LSM1-201ENST00000311351 SPAG4Q9NPE6 437 aa14.12□□□□□ -0.15
LSM1-201ENST00000311351 TMEM38BQ9NVV0 291 aa14.12□□□□□ -0.15
LSM1-201ENST00000311351 ADA2Q9NZK5 511 aa14.12□□□□□ -0.15
LSM1-201ENST00000311351 CHD3Q12873 2000 aaKnown RBP14.12□□□□□ -0.15
LSM1-201ENST00000311351 RTTNQ86VV8 2226 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 NDUFAB1O14561 156 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 TRMUO75648 421 aaKnown RBP14.11□□□□□ -0.15
LSM1-201ENST00000311351 RAB36O95755 333 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 PCSK6P29122 969 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 IFNA8P32881 189 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 DAP3P51398 398 aaKnown RBP14.11□□□□□ -0.15
LSM1-201ENST00000311351 ARMC4Q5T2S8 1044 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 CLEC2AQ6UVW9 174 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 IGFN1Q86VF2 1251 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 SLC22A24Q8N4F4 322 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 FAM86B1Q8N7N1 296 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 FAM156AQ8NDB6 213 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 MCHR2Q969V1 340 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 SEPHS2Q99611 448 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 SH3GL3Q99963 347 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 MRPL13Q9BYD1 178 aaKnown RBP14.11□□□□□ -0.15
LSM1-201ENST00000311351 HIF3AQ9Y2N7 669 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 PMF1-BGLAPU3KQ54 211 aa14.11□□□□□ -0.15
LSM1-201ENST00000311351 JMJD1CQ15652 2540 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 ANK3Q12955 4377 aaKnown RBP14.1□□□□□ -0.15
LSM1-201ENST00000311351 TRAV27A0A087WT01 109 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 A0A087WUU8 490 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 PDE5AO76074 875 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 UBL3O95164 117 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 SLC2A10O95528 541 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 SAGP10523 405 aaPredicted RBP14.1□□□□□ -0.15
LSM1-201ENST00000311351 BMP4P12644 408 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 ACADSP16219 412 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 TCN1P20061 433 aaPredicted RBP14.1□□□□□ -0.15
LSM1-201ENST00000311351 GPR4P46093 362 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 RAB1AP62820 205 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 FMODQ06828 376 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 DAG1Q14118 895 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 RAB39AQ14964 217 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 HIST3H3Q16695 136 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 ALG10Q5BKT4 473 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 TBPL2Q6SJ96 375 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 PIWIL3Q7Z3Z3 882 aaKnown RBP14.1□□□□□ -0.15
LSM1-201ENST00000311351 ANKS4BQ8N8V4 417 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 OR4K5Q8NGD3 323 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 OR13C2Q8NGS9 318 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 HDAC2Q92769 488 aaKnown RBP14.1□□□□□ -0.15
LSM1-201ENST00000311351 ZNF442Q9H7R0 627 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 ARL8BQ9NVJ2 186 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 ARL2BPQ9Y2Y0 163 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 ENPP4Q9Y6X5 453 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 V9GYQ6 96 aa14.1□□□□□ -0.15
LSM1-201ENST00000311351 A0A096LNT2 108 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 IGKV1D-43A0A0B4J1Z2 117 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 B9A039 149 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 INAFM1C9JVW0 142 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 hCG_2039718K7EN88 272 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 GPRIN2O60269 458 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 OR8G3PP0DMU2 310 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 NPR2P20594 1047 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 EFNA4P52798 201 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 PRKCDQ05655 676 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 CD47Q08722 323 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 FHL1Q13642 323 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 EFNB3Q15768 340 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 MSMPQ1L6U9 139 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 GLYATQ6IB77 296 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 ZNF730Q6ZMV8 503 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 HDDC2Q7Z4H3 204 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 ZNF584Q8IVC4 421 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 SVOPLQ8N434 492 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 CLDN22Q8N7P3 220 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 OR10H5Q8NGA6 315 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 OR51A7Q8NH64 312 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 ACOT11Q8WXI4 607 aaPredicted RBP14.09□□□□□ -0.15
LSM1-201ENST00000311351 VRK1Q99986 396 aaPredicted RBP14.09□□□□□ -0.15
LSM1-201ENST00000311351 RHNO1Q9BSD3 238 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 TXNIPQ9H3M7 391 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 PLK3Q9H4B4 646 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 RPS6KA6Q9UK32 745 aa14.09□□□□□ -0.15
LSM1-201ENST00000311351 NPIPB13A6NJU9 1138 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 EFCAB9A8MZ26 197 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 NPIPB4C9JG80 1138 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 ZNF35P13682 527 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 CDAP32320 146 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 ZNF84P51523 738 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 C10orf128Q5T292 105 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 MBOAT2Q6ZWT7 520 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 PIGWQ7Z7B1 504 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 CDK20Q8IZL9 346 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 LRRC75AQ8NAA5 344 aa14.08□□□□□ -0.16
LSM1-201ENST00000311351 IL17RDQ8NFM7 739 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms