RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FAM46AQ96IP4 442 aaKnown RBP18.13■□□□□ 0.49
CLN3-240ENST00000631023 TXNIPQ9H3M7 391 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 UBTD1Q9HAC8 227 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 MOV10Q9HCE1 1003 aaKnown RBP18.13■□□□□ 0.49
CLN3-240ENST00000631023 NPAP1Q9NZP6 1156 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 CSMD1Q96PZ7 3565 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 TRAV27A0A087WT01 109 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 A0A096LPE4 126 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 A0A1W2PPZ6 126 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 SH3PXD2BA1X283 911 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 ACOT8O14734 319 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 PTAFRP25105 342 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 IFNGR2P38484 337 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 ZBED5Q49AG3 693 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 PGM2L1Q6PCE3 622 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 WDFY1Q8IWB7 410 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 OR13C2Q8NGS9 318 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 ASB10Q8WXI3 467 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 ZNF837Q96EG3 531 aaPredicted RBP18.13■□□□□ 0.49
CLN3-240ENST00000631023 RADILQ96JH8 1075 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 ALPK1Q96QP1 1244 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 FUZQ9BT04 418 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 C1QTNF6Q9BXI9 259 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 MGAT4BQ9UQ53 548 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 PLEKHA6Q9Y2H5 1048 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 ARPC4-TTLL3A0A0A6YYG9 625 aa18.12■□□□□ 0.49
CLN3-240ENST00000631023 M0R1B8 84 aa18.12■□□□□ 0.49
CLN3-240ENST00000631023 CDC42EP2O14613 210 aa18.12■□□□□ 0.49
CLN3-240ENST00000631023 PGA4P0DJD7 388 aa18.12■□□□□ 0.49
CLN3-240ENST00000631023 PGA3P0DJD8 388 aa18.12■□□□□ 0.49
CLN3-240ENST00000631023 ACADSP16219 412 aa18.12■□□□□ 0.49
CLN3-240ENST00000631023 MAGEA2P43356 314 aa18.12■□□□□ 0.49
CLN3-240ENST00000631023 OMPP47874 163 aa18.12■□□□□ 0.49
CLN3-240ENST00000631023 CTXN1P60606 82 aa18.12■□□□□ 0.49
CLN3-240ENST00000631023 SEC23BQ15437 767 aa18.12■□□□□ 0.49
CLN3-240ENST00000631023 AQP12BA6NM10 295 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 GSC2O15499 205 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 ENTPD5O75356 428 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 PLAUP00749 431 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 HOXB6P17509 224 aaKnown RBP18.11■□□□□ 0.49
CLN3-240ENST00000631023 RPL4P36578 427 aaKnown RBP18.11■□□□□ 0.49
CLN3-240ENST00000631023 RPL27P61353 136 aaKnown RBP18.11■□□□□ 0.49
CLN3-240ENST00000631023 ARMC4Q5T2S8 1044 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 FAM205BPQ63HN1 556 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 ADAM5Q6NVV9 412 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 C20orf204Q6ZNR8 217 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 AQP12AQ8IXF9 295 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 DEPDC4Q8N2C3 294 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 ITGB1BP2Q9UKP3 347 aa18.11■□□□□ 0.49
CLN3-240ENST00000631023 ABCD4O14678 606 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 TRMUO75648 421 aaKnown RBP18.1■□□□□ 0.49
CLN3-240ENST00000631023 IGHMP01871 453 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 RAP2AP10114 183 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 NR2C1P13056 603 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 CD40P25942 277 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 LIMS1P48059 325 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 HMGA2P52926 109 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 IST1P53990 364 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 TOP3AQ13472 1001 aaPredicted RBP18.1■□□□□ 0.49
CLN3-240ENST00000631023 FHL1Q13642 323 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 FLOT2Q14254 428 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 LRFN4Q6PJG9 635 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 ZNF813Q6ZN06 617 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 ZNF627Q7L945 461 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 LRRC75AQ8NAA5 344 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 NOXO1Q8NFA2 376 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 AKAP1Q92667 903 aaKnown RBP eCLIP18.1■□□□□ 0.49
CLN3-240ENST00000631023 FOXB1Q99853 325 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 MRPL13Q9BYD1 178 aaKnown RBP18.1■□□□□ 0.49
CLN3-240ENST00000631023 NELFAQ9H3P2 528 aa18.1■□□□□ 0.49
CLN3-240ENST00000631023 CCM2LQ9NUG4 571 aaPredicted RBP18.1■□□□□ 0.49
CLN3-240ENST00000631023 ZNF346Q9UL40 294 aaKnown RBP18.1■□□□□ 0.49
CLN3-240ENST00000631023 A6NIZ1 184 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 HS3ST1O14792 307 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 OR10H3O60404 316 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 ATE1O95260 518 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 QDPRP09417 244 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 RAP1BP61224 184 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 RAP1AP62834 184 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 IGFN1Q86VF2 1251 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 PIAS4Q8N2W9 510 aaPredicted RBP18.09■□□□□ 0.49
CLN3-240ENST00000631023 LINC00471Q8N535 108 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 SYT14Q8NB59 555 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 FNDC8Q8TC99 324 aa18.09■□□□□ 0.49
CLN3-240ENST00000631023 CADM1Q9BY67 442 aaKnown RBP18.09■□□□□ 0.49
CLN3-240ENST00000631023 UNC119BA6NIH7 251 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 TNFRSF11BO00300 401 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 DHHO43323 396 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 PTP4A3O75365 173 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 NDUFB2O95178 105 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 CD14P08571 375 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 ACVR1BP36896 505 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 CAPZA2P47755 286 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 RUNX1T1Q06455 604 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 HIST3H3Q16695 136 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 SLC22A25Q6T423 547 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 FAM169BQ8N8A8 192 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 PIGTQ969N2 578 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 MCHR2Q969V1 340 aa18.08■□□□□ 0.49
CLN3-240ENST00000631023 MBD6Q96DN6 1003 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms