RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 NCBP1Q09161 790 aaKnown RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 C1orf61Q13536 156 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 OR5I1Q13606 314 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 GANABQ14697 944 aaKnown RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 FAM78AQ5JUQ0 283 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 C1orf220Q5T0J3 134 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 PYHIN1Q6K0P9 492 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 CNSTQ6PJW8 725 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 NCCRP1Q6ZVX7 275 aaPredicted RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 WDR86Q86TI4 376 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 ECHDC2Q86YB7 292 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 PYROXD1Q8WU10 500 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 RNF139Q8WU17 664 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 SGK3Q96BR1 496 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 TM4SF18Q96CE8 201 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 L3HYPDHQ96EM0 354 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 COL21A1Q96P44 957 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF382Q96SR6 550 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 SECISBP2Q96T21 854 aaKnown RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 DOK1Q99704 481 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 OSBPL10Q9BXB5 764 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 RSPH9Q9H1X1 276 aaPredicted RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 C12orf10Q9HB07 376 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 LY9Q9HBG7 655 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 FARSBQ9NSD9 589 aaKnown RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 BFARQ9NZS9 450 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 ACTR3BQ9P1U1 418 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 CGNQ9P2M7 1197 aaKnown RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 LAMP5Q9UJQ1 280 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 WDR62O43379 1518 aa0.98□□□□□ -2.25
SCN1A-208ENST00000625916 GPATCH8Q9UKJ3 1502 aaKnown RBP0.98□□□□□ -2.25
SCN1A-208ENST00000625916 MSH6P52701 1360 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 CEMIPQ8WUJ3 1361 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 RPAP1Q9BWH6 1393 aaPredicted RBP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 CENPJQ9HC77 1338 aaPredicted RBP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 IGKV1D-13A0A0B4J2D9 117 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 IGKV2-24A0A0C4DH68 120 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 A0A1B0GVI7 797 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 TMEM223A0PJW6 202 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 HSD17B6O14756 317 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 XPO1O14980 1071 aaKnown RBP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 MGRN1O60291 552 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 UPK3AO75631 287 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 CDRT1O95170 752 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 FABP3P05413 133 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 CAPN1P07384 714 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 OR56A5P0C7T3 313 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 IGKV1-13P0DP09 117 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 EPB41P11171 864 aaKnown RBP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 NCF1P14598 390 aaPredicted RBP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 FOLR1P15328 257 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 ATP6V1C1P21283 382 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 AK4P27144 223 aaPredicted RBP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 LAP3P28838 519 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 CA8P35219 290 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 QARSP47897 775 aaKnown RBP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 CSNK1A1P48729 337 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 SUB1P53999 127 aaKnown RBP eCLIP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 ARG2P78540 354 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 SCRN3Q0VDG4 424 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 PIGHQ14442 188 aaPredicted RBP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 RABL6Q3YEC7 729 aaPredicted RBP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 TMEM225Q6GV28 225 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF493Q6ZR52 646 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 ABHD13Q7L211 337 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 PEX26Q7Z412 305 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 NUDCD3Q8IVD9 361 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 ZNF683Q8IZ20 524 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 STPG2Q8N412 459 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 FAM133AQ8N9E0 248 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 GATSQ8NAP1 163 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 TRMT10AQ8TBZ6 339 aaKnown RBP0.97□□□□□ -2.25
SCN1A-208ENST00000625916 TGM7Q96PF1 710 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 SULT4A1Q9BR01 284 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 LRRN3Q9H3W5 708 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 UGT1A7Q9HAW7 530 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 UGT1A10Q9HAW8 530 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 UGT1A8Q9HAW9 530 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 ISYNA1Q9NPH2 558 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 RNF14Q9UBS8 474 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 KIAA1257Q9ULG3 409 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 ODF2LQ9ULJ1 636 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 KCNIP3Q9Y2W7 256 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 MEMO1Q9Y316 297 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 TIMM10BQ9Y5J6 103 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 PTPRTO14522 1441 aa0.97□□□□□ -2.25
SCN1A-208ENST00000625916 ATP8B3O60423 1300 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 KIF16BQ96L93 1317 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 AHNAK2Q8IVF2 5795 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 ARPC4-TTLL3A0A0A6YYG9 625 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 IGHV3-74A0A0B4J1X5 117 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 A8MUU9 505 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 C16orf90A8MZG2 172 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 CCNKO75909 580 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 HLA-DPB1P04440 258 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 BCHEP06276 602 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 P0C880 135 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 CCR1P32246 355 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 NPBWR2P48146 333 aa0.96□□□□□ -2.26
SCN1A-208ENST00000625916 RGS4P49798 205 aa0.96□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms