RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 LGALS3BPQ08380 585 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 CAMK2DQ13557 499 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 DAG1Q14118 895 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 GPR139Q6DWJ6 353 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 BEND4Q6ZU67 534 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 CBR4Q8N4T8 237 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 POMGNT2Q8NAT1 580 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 MAGEE2Q8TD90 523 aaPredicted RBP17.4■□□□□ 0.38
UPF3A-211ENST00000618700 Q96M85 177 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 C9orf16Q9BUW7 83 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 MRPL13Q9BYD1 178 aaKnown RBP17.4■□□□□ 0.38
UPF3A-211ENST00000618700 RNPEPL1Q9HAU8 725 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 KRT84Q9NSB2 600 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 NKX1-2Q9UD57 310 aaPredicted RBP17.4■□□□□ 0.38
UPF3A-211ENST00000618700 RRP15Q9Y3B9 282 aaKnown RBP17.4■□□□□ 0.38
UPF3A-211ENST00000618700 IER3IP1Q9Y5U9 82 aa17.4■□□□□ 0.38
UPF3A-211ENST00000618700 TEX13CA0A0J9YWL9 993 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 A6NIZ1 184 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 CENPBD1B2RD01 187 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 SOCS2O14508 198 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 MGRN1O60291 552 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 MITFO75030 526 aaPredicted RBP17.39■□□□□ 0.37
UPF3A-211ENST00000618700 UPK3AO75631 287 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 TRMUO75648 421 aaKnown RBP17.39■□□□□ 0.37
UPF3A-211ENST00000618700 IGHV3-9P01782 118 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 IGHG1P01857 330 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 ACADSP16219 412 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 IGFBP5P24593 272 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 PCYT1AP49585 367 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 RPS6KA3P51812 740 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 RAP1BP61224 184 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 RAP1AP62834 184 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 MESTQ5EB52 335 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 CLEC12AQ5QGZ9 265 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 CARD17Q5XLA6 110 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 BRICD5Q6PL45 260 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 LINGO2Q7L985 606 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 NOXO1Q8NFA2 376 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 OR4Q3Q8NH05 313 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 TEX47Q8TBZ9 253 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 HDAC2Q92769 488 aaKnown RBP17.39■□□□□ 0.37
UPF3A-211ENST00000618700 TMEM54Q969K7 222 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 ZNF566Q969W8 418 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 RASD2Q96D21 266 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 ZNF570Q96NI8 536 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 ALKBH3Q96Q83 286 aaPredicted RBP17.39■□□□□ 0.37
UPF3A-211ENST00000618700 IFT27Q9BW83 186 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 RBM24Q9BX46 236 aaKnown RBP17.39■□□□□ 0.37
UPF3A-211ENST00000618700 KCNJ16Q9NPI9 418 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 GALNT8Q9NY28 637 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 GRHPRQ9UBQ7 328 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 COL12A1Q99715 3063 aa17.39■□□□□ 0.37
UPF3A-211ENST00000618700 ADGRG4Q8IZF6 3080 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 H3BN98 237 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 IMPA2O14732 288 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 CASQ2O14958 399 aaPredicted RBP17.38■□□□□ 0.37
UPF3A-211ENST00000618700 IDH3BO43837 385 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 COX5AP20674 150 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 ACVR1BP36896 505 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 CSNK1A1P48729 337 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 ALDH3A2P51648 485 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 KRR1Q13601 381 aaKnown RBP17.38■□□□□ 0.37
UPF3A-211ENST00000618700 HIST3H3Q16695 136 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 PHYHD1Q5SRE7 291 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 UBE2J2Q8N2K1 259 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 LNX2Q8N448 690 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 OR2T33Q8NG76 320 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 RNASE6Q93091 150 aaKnown RBP17.38■□□□□ 0.37
UPF3A-211ENST00000618700 EME1Q96AY2 570 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 NMD3Q96D46 503 aaKnown RBP17.38■□□□□ 0.37
UPF3A-211ENST00000618700 ERMAPQ96PL5 475 aaPredicted RBP17.38■□□□□ 0.37
UPF3A-211ENST00000618700 SLC29A1Q99808 456 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 TSSK6Q9BXA6 273 aa17.38■□□□□ 0.37
UPF3A-211ENST00000618700 RPL36A-HNRNPH2H7BZ11 118 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 ESRRGP62508 458 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 FAPQ12884 760 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 RIPK1Q13546 671 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 TRIP10Q15642 601 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 PGGHGQ32M88 737 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 ZBTB49Q6ZSB9 765 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 ADCK1Q86TW2 530 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 ALG12Q9BV10 488 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 GABARAPL3Q9BY60 117 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 SLC25A19Q9HC21 320 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 ASB6Q9NWX5 421 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 ELOVL5Q9NYP7 299 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 GLTPQ9NZD2 209 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 UPB1Q9UBR1 384 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 BAIAP2Q9UQB8 552 aa17.37■□□□□ 0.37
UPF3A-211ENST00000618700 KLF2Q9Y5W3 355 aaPredicted RBP17.37■□□□□ 0.37
UPF3A-211ENST00000618700 SPTAN1Q13813 2472 aaKnown RBP17.36■□□□□ 0.37
UPF3A-211ENST00000618700 ITGA5P08648 1049 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 IGHV1-2P23083 117 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 PEX2P28328 305 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 CCKARP32238 428 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 CD79BP40259 229 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 GIPRP48546 466 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 ZNF133P52736 654 aaPredicted RBP17.36■□□□□ 0.37
UPF3A-211ENST00000618700 CRISP1P54107 249 aa17.36■□□□□ 0.37
UPF3A-211ENST00000618700 FOXG1P55316 489 aaPredicted RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms