RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 PHYHIPQ92561 330 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 ITFG2Q969R8 447 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 FRMD6Q96NE9 622 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 RNF121Q9H920 327 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 ABRACLQ9P1F3 81 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 MYOTQ9UBF9 498 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 B9D1Q9UPM9 204 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 FKBP7Q9Y680 259 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 A0A1B0GTH9 108 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 FAM240BA0A1B0GVZ2 78 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 D6RAR5 112 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 ONECUT2O95948 504 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 HLA-DOBP13765 273 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 INSM1Q01101 510 aaPredicted RBP12.28□□□□□ -0.44
NEK3-205ENST00000610828 SF3A2Q15428 464 aaKnown RBP12.28□□□□□ -0.44
NEK3-205ENST00000610828 TRIM61Q5EBN2 209 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 TMEM205Q6UW68 189 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 SLC35D2Q76EJ3 337 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 ZNF248Q8NDW4 579 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 OR8K3Q8NH51 312 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 NSMAFQ92636 917 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 ATOH1Q92858 354 aaPredicted RBP12.28□□□□□ -0.44
NEK3-205ENST00000610828 NXPE2Q96DL1 559 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 MAP6Q96JE9 813 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 DERL3Q96Q80 235 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 MNTQ99583 582 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 THAP7Q9BT49 309 aaPredicted RBP12.28□□□□□ -0.44
NEK3-205ENST00000610828 GTPBP2Q9BX10 602 aaKnown RBP12.28□□□□□ -0.44
NEK3-205ENST00000610828 SLC26A1Q9H2B4 701 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 ZCCHC4Q9H5U6 513 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 MRPL39Q9NYK5 338 aaKnown RBP12.28□□□□□ -0.44
NEK3-205ENST00000610828 PPP4R1LQ9P1A2 415 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 NLKQ9UBE8 527 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 CACNA1CQ13936 2221 aa12.28□□□□□ -0.44
NEK3-205ENST00000610828 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 SHISA8B8ZZ34 492 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 FTCDNL1E5RQL4 147 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 LANCL1O43813 399 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 ZNF28P17035 718 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 APOBEC1P41238 236 aaKnown RBP12.27□□□□□ -0.44
NEK3-205ENST00000610828 EGR3Q06889 387 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 FOXF1Q12946 379 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 OR7A5Q15622 319 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 ETFDHQ16134 617 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 MRPL14Q6P1L8 145 aaKnown RBP12.27□□□□□ -0.44
NEK3-205ENST00000610828 LRRC69Q6ZNQ3 347 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 ASB18Q6ZVZ8 466 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 C1orf210Q8IVY1 113 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 OR10G3Q8NGC4 313 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 OTOSQ8NHW6 89 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 TTC9Q92623 222 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 RFT1Q96AA3 541 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 ABHD1Q96SE0 405 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 AMELYQ99218 206 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 METTL7AQ9H8H3 244 aa12.27□□□□□ -0.44
NEK3-205ENST00000610828 TMEM221A6NGB7 291 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 H3BML4 177 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 ZNF593O00488 134 aaPredicted RBP12.27□□□□□ -0.45
NEK3-205ENST00000610828 EEF1E1O43324 174 aaKnown RBP12.27□□□□□ -0.45
NEK3-205ENST00000610828 CER1O95813 267 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 TFPIP10646 304 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 FGF5P12034 268 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 CTLA4P16410 223 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 NAGAP17050 411 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 SOX2P48431 317 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 NKX2-5P52952 324 aaPredicted RBP12.27□□□□□ -0.45
NEK3-205ENST00000610828 SUMO3P55854 103 aaPredicted RBP12.27□□□□□ -0.45
NEK3-205ENST00000610828 PUDPQ08623 228 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 MRPL28Q13084 256 aaKnown RBP12.27□□□□□ -0.45
NEK3-205ENST00000610828 IL11RAQ14626 422 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 ODF4Q2M2E3 257 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 HES5Q5TA89 166 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 PEAR1Q5VY43 1037 aaPredicted RBP12.27□□□□□ -0.45
NEK3-205ENST00000610828 ESPNLQ6ZVH7 1005 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 MFRPQ9BY79 579 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 VSX1Q9NZR4 365 aaPredicted RBP12.27□□□□□ -0.45
NEK3-205ENST00000610828 MRPS7Q9Y2R9 242 aaKnown RBP12.27□□□□□ -0.45
NEK3-205ENST00000610828 HRH3Q9Y5N1 445 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 ZDBF2Q9HCK1 2354 aa12.27□□□□□ -0.45
NEK3-205ENST00000610828 CPAMD8Q8IZJ3 1885 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 SLC22A23A1A5C7 686 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 H3BSH0 61 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 PHYHO14832 338 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 ITGA10O75578 1167 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 TCEA1P23193 301 aaKnown RBP12.26□□□□□ -0.45
NEK3-205ENST00000610828 Q499Y3 187 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 PYHIN1Q6K0P9 492 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 NCCRP1Q6ZVX7 275 aaPredicted RBP12.26□□□□□ -0.45
NEK3-205ENST00000610828 OR6F1Q8NGZ6 308 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 LGALS14Q8TCE9 139 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 HAVCR2Q8TDQ0 301 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 UBASH3BQ8TF42 649 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 DDIT4LQ96D03 193 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 ZC3HAV1LQ96H79 300 aaKnown RBP12.26□□□□□ -0.45
NEK3-205ENST00000610828 DEFB126Q9BYW3 111 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.26□□□□□ -0.45
NEK3-205ENST00000610828 SLCO1C1Q9NYB5 712 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 GPN3Q9UHW5 284 aaPredicted RBP12.26□□□□□ -0.45
NEK3-205ENST00000610828 ZNF221Q9UK13 617 aa12.26□□□□□ -0.45
NEK3-205ENST00000610828 POU2F3Q9UKI9 436 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms