RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 NR4A1P22736 598 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 EDNRAP25101 427 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 DPP4P27487 766 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 CFPP27918 469 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 CDKN2AP42771 156 aaKnown RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 RIDAP52758 137 aaKnown RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 RPS25P62851 125 aaKnown RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 FABP5Q01469 135 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 ZNF85Q03923 595 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 CDC20Q12834 499 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 HNRNPA0Q13151 305 aaKnown RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 MYBPHQ13203 477 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 OR7A5Q15622 319 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 LPAL2Q16609 132 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 PCK2Q16822 640 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 HSD17B12Q53GQ0 312 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 MESTQ5EB52 335 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 ACER2Q5QJU3 275 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 LINC01590Q5TEZ4 76 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 HES3Q5TGS1 186 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 TMEM225Q6GV28 225 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 ARL9Q6T311 187 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 ZNF704Q6ZNC4 412 aaPredicted RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 TMPPEQ6ZT21 453 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 ESPNLQ6ZVH7 1005 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 SLC35D2Q76EJ3 337 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 PPP1R32Q7Z5V6 425 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 PIP4P1Q86T03 277 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 IGFN1Q86VF2 1251 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 MEX3DQ86XN8 651 aaKnown RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 GLB1L2Q8IW92 636 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 MFSD4AQ8N468 514 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 LRRC17Q8N6Y2 441 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 TMEM99Q8N816 258 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 EXD3Q8N9H8 876 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 OR2I1PQ8NGU4 316 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 OR6N2Q8NGY6 317 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 OR5AK2Q8NH90 309 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 ABHD4Q8TB40 342 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 THAP3Q8WTV1 239 aaPredicted RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 ASB10Q8WXI3 467 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 ADAMTS14Q8WXS8 1223 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 CPNE4Q96A23 557 aaPredicted RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 C8orf44Q96CB5 159 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 NTNG2Q96CW9 530 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 RASD2Q96D21 266 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 ZMYND19Q96E35 227 aaPredicted RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 PELI1Q96FA3 418 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 SLC25A44Q96H78 314 aaPredicted RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 NECAB3Q96P71 396 aaPredicted RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 UBL7Q96S82 380 aaPredicted RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 FAM173AQ9BQD7 235 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 UTP23Q9BRU9 249 aaKnown RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 TMED9Q9BVK6 235 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 SPRY4Q9C004 299 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 SYT4Q9H2B2 425 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 CDCP1Q9H5V8 836 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 NEK6Q9HC98 313 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 B3GAT2Q9NPZ5 323 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 P4HTMQ9NXG6 502 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 FBXL4Q9UKA2 621 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 KLF13Q9Y2Y9 288 aaPredicted RBP6.77□□□□□ -1.33
VPS39-204ENST00000561818 ETV7Q9Y603 341 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 EXPH5Q8NEV8 1989 aa6.77□□□□□ -1.33
VPS39-204ENST00000561818 TRIOO75962 3097 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 SCN2AQ99250 2005 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 ACOT7O00154 380 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 SULT2B1O00204 365 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 GPR171O14626 319 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 PFDN1O60925 122 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 SERPINI2O75830 405 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 F13BP05160 661 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 ERCC1P07992 297 aaPredicted RBP6.76□□□□□ -1.33
VPS39-204ENST00000561818 UCHL1P09936 223 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 BMP4P12644 408 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 CNR1P21554 472 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 OTX2P32243 289 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 DLSTP36957 453 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 RPS19P39019 145 aaKnown RBP6.76□□□□□ -1.33
VPS39-204ENST00000561818 PTGDSP41222 190 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 INPP1P49441 399 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 SOX8P57073 446 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 CLRN1P58418 232 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 RAC3P60763 192 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 RPS3AP61247 264 aaKnown RBP6.76□□□□□ -1.33
VPS39-204ENST00000561818 LSM6P62312 80 aaKnown RBP6.76□□□□□ -1.33
VPS39-204ENST00000561818 ADAM8P78325 824 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 POU3F1Q03052 451 aaPredicted RBP6.76□□□□□ -1.33
VPS39-204ENST00000561818 ALKBH1Q13686 389 aaKnown RBP6.76□□□□□ -1.33
VPS39-204ENST00000561818 TOMM20Q15388 145 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 TAB1Q15750 504 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 NRN1LQ496H8 165 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 Q499Y3 187 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 ACSM3Q53FZ2 586 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 ZMAT1Q5H9K5 638 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 RAET1LQ5VY80 246 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 MZT2BQ6NZ67 158 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 POMZP3Q6PJE2 187 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 KLHL24Q6TFL4 600 aa6.76□□□□□ -1.33
VPS39-204ENST00000561818 IL20RBQ6UXL0 311 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms