RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 NRARPQ7Z6K4 114 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 MYPOPQ86VE0 399 aaPredicted RBP4.72□□□□□ -1.65
RTF1-204ENST00000558117 ZNF573Q86YE8 665 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 CDH26Q8IXH8 852 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 TMEM156Q8N614 296 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 NIPA2Q8N8Q9 360 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 SYT14Q8NB59 555 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 OR2L2Q8NH16 312 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 SLCO4A1Q96BD0 722 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 MOB3AQ96BX8 217 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 ZFP3Q96NJ6 502 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 LPAR4Q99677 370 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 FAM173AQ9BQD7 235 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 ATG101Q9BSB4 218 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 MCRIP2Q9BUT9 160 aaKnown RBP4.72□□□□□ -1.65
RTF1-204ENST00000558117 DDX47Q9H0S4 455 aaKnown RBP4.72□□□□□ -1.65
RTF1-204ENST00000558117 PPANQ9NQ55 473 aaKnown RBP4.72□□□□□ -1.65
RTF1-204ENST00000558117 DDX28Q9NUL7 540 aaKnown RBP4.72□□□□□ -1.65
RTF1-204ENST00000558117 FOXA2Q9Y261 457 aaPredicted RBP4.72□□□□□ -1.65
RTF1-204ENST00000558117 EXOGQ9Y2C4 368 aaKnown RBP4.72□□□□□ -1.65
RTF1-204ENST00000558117 PPP2R2CQ9Y2T4 447 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 MMP24Q9Y5R2 645 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 PRSS21Q9Y6M0 314 aa4.72□□□□□ -1.65
RTF1-204ENST00000558117 A0A0J9YWU9 116 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 FAM230AA0A1W2PPH8 454 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 A0A1W2PPK0 400 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 ANKDD1BA6NHY2 528 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 GOLGA6L19H0YKK7 550 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 CALUO43852 315 aaPredicted RBP4.71□□□□□ -1.66
RTF1-204ENST00000558117 PRAF2O60831 178 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 RAD51DO75771 328 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 POU2F1P14859 743 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 PTNP21246 168 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 SHMT2P34897 504 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 TAGLN2P37802 199 aaKnown RBP4.71□□□□□ -1.66
RTF1-204ENST00000558117 DNASE1L1P49184 302 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 CNN1P51911 297 aaKnown RBP4.71□□□□□ -1.66
RTF1-204ENST00000558117 HNRNPFP52597 415 aaKnown RBP4.71□□□□□ -1.66
RTF1-204ENST00000558117 KRTAP10-3P60369 221 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 ZNHIT3Q15649 155 aaPredicted RBP4.71□□□□□ -1.66
RTF1-204ENST00000558117 XKR6Q5GH73 641 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 C11orf71Q6IPW1 123 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 FAAP20Q6NZ36 180 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 KIAA1328Q86T90 577 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 OR5AP2Q8NGF4 316 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 GATAD1Q8WUU5 269 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 STARD4Q96DR4 205 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 POM121L2Q96KW2 1035 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 TTC25Q96NG3 672 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 COL21A1Q96P44 957 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 SLC6A7Q99884 636 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 SSX3Q99909 188 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 CCM2Q9BSQ5 444 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 CNPY3Q9BT09 278 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 NTMT1Q9BV86 223 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 OR52A5Q9H2C5 316 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 RMND5AQ9H871 391 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 Q9H8V8 135 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 UGT1A7Q9HAW7 530 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 DNAJC4Q9NNZ3 241 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 ADAP2Q9NPF8 381 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 EXOC1Q9NV70 894 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.71□□□□□ -1.66
RTF1-204ENST00000558117 NECAP2Q9NVZ3 263 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 SMPD3Q9NY59 655 aaPredicted RBP4.71□□□□□ -1.66
RTF1-204ENST00000558117 OR6C2Q9NZP2 312 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 GRID1Q9ULK0 1009 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 RNF115Q9Y4L5 304 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 PPIAL4AQ9Y536 164 aa4.71□□□□□ -1.66
RTF1-204ENST00000558117 C15orf38-AP3S2A0A0A6YYH1 394 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 IGKV3D-20A0A0C4DH25 116 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 PVALEFA0A1B0GWK0 134 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 A0A1W2PPW3 197 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 MACROD2A1Z1Q3 448 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 XKRY2A2RUG3 117 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 CTAGE15A4D2H0 777 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 LRP5LA4QPB2 252 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 ERICH4A6NGS2 130 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 H0YC42 278 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 ZNF195O14628 629 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 B4GALT2O60909 372 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 LY6HO94772 140 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 UGT1A6P19224 532 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 PCMT1P22061 227 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 IL2RGP31785 369 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 PCK1P35558 622 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 CDX1P47902 265 aaPredicted RBP4.7□□□□□ -1.66
RTF1-204ENST00000558117 NPBWR1P48145 328 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 TRPC1P48995 793 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 SNX1Q13596 522 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 CUL3Q13618 768 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 RAB35Q15286 201 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 ZSWIM7Q19AV6 140 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 LRRC23Q53EV4 343 aaPredicted RBP4.7□□□□□ -1.66
RTF1-204ENST00000558117 SLC35D3Q5M8T2 416 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 LEG1Q6P5S2 330 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 CTAGE6Q86UF2 777 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 ZNF679Q8IYX0 411 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 GCNT2Q8N0V5 402 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 MLKLQ8NB16 471 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms