RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 TSPAN19P0C672 248 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 CECR9P0C854 216 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 PGA4P0DJD7 388 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 PGA3P0DJD8 388 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 CD99P14209 185 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF26P17031 533 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 CALCRP30988 508 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 SH3BGRP55822 239 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 RPS4XP62701 263 aaKnown RBP10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 NPRL3Q12980 569 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 TOP3AQ13472 1001 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 SEC23BQ15437 767 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 ARMC4Q5T2S8 1044 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 PODNL1Q6PEZ8 512 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 C16orf89Q6UX73 402 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 CYP2R1Q6VVX0 501 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF730Q6ZMV8 503 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF813Q6ZN06 617 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 MDP1Q86V88 176 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 CIARTQ8N365 385 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 CLDN22Q8N7P3 220 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 OR52J3Q8NH60 311 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 SLC7A13Q8TCU3 470 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 MAGEE2Q8TD90 523 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 LIPHQ8WWY8 451 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 ASB10Q8WXI3 467 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 ACOT11Q8WXI4 607 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 SLC38A2Q96QD8 506 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 GORASP2Q9H8Y8 452 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 DLL4Q9NR61 685 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 INIPQ9NRY2 104 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF701Q9NV72 531 aaPredicted RBP10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF224Q9NZL3 707 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 RPS6KA6Q9UK32 745 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 POU2F3Q9UKI9 436 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 POFUT2Q9Y2G5 429 aa10.08□□□□□ -0.8
CCDC88C-208ENST00000554165 IGKV1D-43A0A0B4J1Z2 117 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 A0A1W2PRG6 482 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 TRIM64A6NGJ6 449 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 TRIM64BA6NI03 449 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 EFCAB9A8MZ26 197 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 TRMUO75648 421 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 PDE5AO76074 875 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 IGF2P01344 180 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 IGLV1-44P01699 117 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 H1F0P07305 194 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 QDPRP09417 244 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 SAGP10523 405 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 CD79AP11912 226 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 ATP6V1B2P21281 511 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 CAPZA2P47755 286 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 IDH3GP51553 393 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 ATP5J2P56134 94 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 PRKCDQ05655 676 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 FMODQ06828 376 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 FGD3Q5JSP0 725 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 MBOAT2Q6ZWT7 520 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 SSX8Q7RTT4 187 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 YTHDF3Q7Z739 585 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 SKA3Q8IX90 412 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 LRRC75AQ8NAA5 344 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 HDAC2Q92769 488 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 ZNF566Q969W8 418 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 SLC25A44Q96H78 314 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 MS4A3Q96HJ5 214 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 PYURFQ96I23 114 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 CLPTM1LQ96KA5 538 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 ADAD1Q96M93 576 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 Q96MF0 132 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 GPA33Q99795 319 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 FOXB1Q99853 325 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 SMR3AQ99954 134 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 SH3GL3Q99963 347 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 TRAF4Q9BUZ4 470 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 MRPL13Q9BYD1 178 aaKnown RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 GSX2Q9BZM3 304 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 GSX1Q9H4S2 264 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 OBP2BQ9NPH6 170 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 B3GAT2Q9NPZ5 323 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 B3GNT2Q9NY97 397 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 CRNNQ9UBG3 495 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 MAGEL2Q9UJ55 1249 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 GDF2Q9UK05 429 aaPredicted RBP10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 MGAT4BQ9UQ53 548 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 HIF3AQ9Y2N7 669 aa10.07□□□□□ -0.8
CCDC88C-208ENST00000554165 A0A1W2PRQ8 180 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 MCIDASD6RGH6 385 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 DHHO43323 396 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 GMNNO75496 209 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 SLC2A10O95528 541 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 CBR1P16152 277 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 ACADSP16219 412 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 RHCEP18577 417 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 CDAP32320 146 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 IFNA8P32881 189 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 TTKP33981 857 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 FABP6P51161 128 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 CLRN1P58418 232 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 CTXN1P60606 82 aa10.06□□□□□ -0.8
CCDC88C-208ENST00000554165 MS4A2Q01362 244 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms