RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CRYBA1P05813 215 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 HNRNPA1P09651 372 aaKnown RBP eCLIP13.09□□□□□ -0.31
LIMS1-215ENST00000544547 PRKAR1BP31321 381 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 CASRP41180 1078 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 SHEQ5VZ18 495 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 CORO6Q6QEF8 472 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 ACOT7LQ6ZUV0 252 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 DPY19L4Q7Z388 723 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 IL17RCQ8NAC3 791 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 OR5M9Q8NGP3 310 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 OR2L8Q8NGY9 312 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 SMARCD2Q92925 531 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 MS4A4EQ96PG1 132 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 ADRA2AP08913 450 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 OR4E1P0C645 316 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 PCBP3P57721 371 aaKnown RBP13.09□□□□□ -0.31
LIMS1-215ENST00000544547 BATFQ16520 125 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 MAMSTRQ6ZN01 415 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 PRRT1Q99946 306 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 FBRSQ9HAH7 460 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 ADAM18Q9Y3Q7 739 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 OR1A2Q9Y585 309 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 TMEM14AQ9Y6G1 99 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 MIA3Q5JRA6 1907 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 PRAMEF25A6NGN4 478 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 SDHAP31040 664 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 KCTD18Q6PI47 426 aaPredicted RBP13.09□□□□□ -0.31
LIMS1-215ENST00000544547 TMEFF1Q8IYR6 380 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 SIGLEC11Q96RL6 698 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 PBDC1Q9BVG4 233 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 UTRNP46939 3433 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 TRBV23-1A0A0A0MS06 115 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 PEX12O00623 359 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 OR2F2O95006 317 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 OR2F1Q13607 317 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 TMEM35AQ53FP2 167 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 EXOSC6Q5RKV6 272 aaKnown RBP13.09□□□□□ -0.31
LIMS1-215ENST00000544547 TCEAL8Q8IYN2 117 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 FAM71CQ8NEG0 241 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 TOE1Q96GM8 510 aaKnown RBP13.09□□□□□ -0.31
LIMS1-215ENST00000544547 CSAG2Q9Y5P2 127 aa13.09□□□□□ -0.31
LIMS1-215ENST00000544547 RBBP6Q7Z6E9 1792 aaKnown RBP13.09□□□□□ -0.31
LIMS1-215ENST00000544547 ICE1Q9Y2F5 2266 aa13.08□□□□□ -0.31
LIMS1-215ENST00000544547 EFCAB7A8K855 629 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 RAG2P55895 527 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 KCNAB1Q14722 419 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 OR7E24Q6IFN5 339 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 OVCH1Q7RTY7 1134 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 OR14A16Q8NHC5 309 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 ATOH1Q92858 354 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-215ENST00000544547 ALG12Q9BV10 488 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 FN3KRPQ9HA64 309 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 MAFFQ9ULX9 164 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 TRBV5-4A0A0C4DH59 114 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 RNGTTO60942 597 aaKnown RBP13.08□□□□□ -0.32
LIMS1-215ENST00000544547 CD160O95971 181 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 VAMP2P63027 116 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 SNRPNP63162 240 aaKnown RBP13.08□□□□□ -0.32
LIMS1-215ENST00000544547 CDK5R1Q15078 307 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 FAM111BQ6SJ93 734 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF550Q7Z398 422 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 ST6GALNAC5Q9BVH7 336 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 PTGES2Q9H7Z7 377 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 TESQ9UGI8 421 aaKnown RBP13.08□□□□□ -0.32
LIMS1-215ENST00000544547 PURGQ9UJV8 347 aaKnown RBP13.08□□□□□ -0.32
LIMS1-215ENST00000544547 GPR55Q9Y2T6 319 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-215ENST00000544547 SIRT4Q9Y6E7 314 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-215ENST00000544547 SLC33A1O00400 549 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-215ENST00000544547 OR13C7P0DN81 318 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 NR2C1P13056 603 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 AVPR2P30518 371 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 PLGLB1Q02325 96 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 DCST2Q5T1A1 773 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 ZNF619Q8N2I2 560 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 RASD2Q96D21 266 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 HHIPL1Q96JK4 782 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 ELF4Q99607 663 aaPredicted RBP13.08□□□□□ -0.32
LIMS1-215ENST00000544547 PIGQQ9BRB3 760 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 SLC19A3Q9BZV2 496 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 PARPBPQ9NWS1 579 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 KCMF1Q9P0J7 381 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 PRODH2Q9UF12 536 aa13.08□□□□□ -0.32
LIMS1-215ENST00000544547 SHISA3A0PJX4 238 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 MPIG6BO95866 241 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 GPR143P51810 404 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 LIPNQ5VXI9 398 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 HTR3DQ70Z44 454 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 PARS2Q7L3T8 475 aaKnown RBP13.07□□□□□ -0.32
LIMS1-215ENST00000544547 NAXDQ8IW45 347 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 HGDQ93099 445 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 FAM3DQ96BQ1 224 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 SMIM19Q96E16 107 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 FZD3Q9NPG1 666 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 OR6C68A6NDL8 312 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 MFSD2BA6NFX1 497 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 NDUFB6O95139 128 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 RIDAP52758 137 aaKnown RBP13.07□□□□□ -0.32
LIMS1-215ENST00000544547 RUNX3Q13761 415 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 USP53Q70EK8 1073 aa13.07□□□□□ -0.32
LIMS1-215ENST00000544547 BAP18Q8IXM2 172 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms