RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SPATA7Q9P0W8 599 aa1.81□□□□□ -2.12
CD44-238ENST00000534296 STOX2Q9P2F5 926 aaPredicted RBP1.81□□□□□ -2.12
CD44-238ENST00000534296 SLC7A8Q9UHI5 535 aa1.81□□□□□ -2.12
CD44-238ENST00000534296 PACSIN2Q9UNF0 486 aaPredicted RBP1.81□□□□□ -2.12
CD44-238ENST00000534296 GOLT1BQ9Y3E0 138 aa1.81□□□□□ -2.12
CD44-238ENST00000534296 LRRIQ3A6PVS8 624 aaPredicted RBP1.8□□□□□ -2.12
CD44-238ENST00000534296 FAM166BA8MTA8 275 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 CDC7O00311 574 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 PEX7O00628 323 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 CDC40O60508 579 aaKnown RBP eCLIP1.8□□□□□ -2.12
CD44-238ENST00000534296 HMMRO75330 724 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 SNX4O95219 450 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 SLC25A14O95258 325 aaPredicted RBP1.8□□□□□ -2.12
CD44-238ENST00000534296 TOP1P11387 765 aaKnown RBP1.8□□□□□ -2.12
CD44-238ENST00000534296 CCNE1P24864 410 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 FOXN2P32314 431 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 LRRC74AQ0VAA2 488 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 BST2Q10589 180 aaKnown RBP1.8□□□□□ -2.12
CD44-238ENST00000534296 DAZ2Q13117 558 aaKnown RBP1.8□□□□□ -2.12
CD44-238ENST00000534296 GINS1Q14691 196 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 RCN1Q15293 331 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 RABL6Q3YEC7 729 aaPredicted RBP1.8□□□□□ -2.12
CD44-238ENST00000534296 TFDP3Q5H9I0 405 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 THEM4Q5T1C6 240 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 CCNJQ5T5M9 372 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 ABHD13Q7L211 337 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 FAM228AQ86W67 206 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 ZNF786Q8N393 782 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 ZNF557Q8N988 423 aaPredicted RBP1.8□□□□□ -2.12
CD44-238ENST00000534296 DUSP18Q8NEJ0 188 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 VN1R2Q8NFZ6 395 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 OR4F6Q8NGB9 312 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 SGK3Q96BR1 496 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 RASD2Q96D21 266 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 CNDP1Q96KN2 507 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 OXGR1Q96P68 337 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 MS4A4EQ96PG1 132 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 TAAR1Q96RJ0 339 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 VCXQ9H320 206 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 DAZ3Q9NR90 486 aaKnown RBP1.8□□□□□ -2.12
CD44-238ENST00000534296 CCL28Q9NRJ3 127 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 TRMT112Q9UI30 125 aaKnown RBP1.8□□□□□ -2.12
CD44-238ENST00000534296 ZNF639Q9UID6 485 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 RABL2BQ9UNT1 228 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 NEU3Q9UQ49 428 aa1.8□□□□□ -2.12
CD44-238ENST00000534296 RRP15Q9Y3B9 282 aaKnown RBP1.8□□□□□ -2.12
CD44-238ENST00000534296 IGLV11-55A0A075B6I3 123 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 CTAGE15A4D2H0 777 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 SMCO2A6NFE2 343 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 C9JVG2 144 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 KMOO15229 486 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 EEDO75530 441 aaKnown RBP1.79□□□□□ -2.12
CD44-238ENST00000534296 EIF3GO75821 320 aaKnown RBP eCLIP1.79□□□□□ -2.12
CD44-238ENST00000534296 CLPXO76031 633 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 TMEM50AO95807 157 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 FGGP02679 453 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 PCCAP05165 728 aaPredicted RBP1.79□□□□□ -2.12
CD44-238ENST00000534296 ZDHHC11BP0C7U3 371 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 HOXA9P31269 272 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 CTRLP40313 264 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 RPS10P46783 165 aaKnown RBP1.79□□□□□ -2.12
CD44-238ENST00000534296 RORCP51449 518 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 CCR8P51685 355 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 ACLYP53396 1101 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 FBXW4P57775 412 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 ZNF763Q0D2J5 394 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 AQP6Q13520 282 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 C16orf72Q14CZ0 275 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 KCTD19Q17RG1 926 aaPredicted RBP1.79□□□□□ -2.12
CD44-238ENST00000534296 TMEM183BQ1AE95 376 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 CCDC183Q5T5S1 534 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 TSPO2Q5TGU0 170 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 RAET1LQ5VY80 246 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 C1orf94Q6P1W5 598 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 Q6P435 159 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 ACP7Q6ZNF0 438 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 COX15Q7KZN9 410 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 PRSS41Q7RTY9 318 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 CTAGE6Q86UF2 777 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 THOC6Q86W42 341 aaKnown RBP1.79□□□□□ -2.12
CD44-238ENST00000534296 SLC22A9Q8IVM8 553 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 TMEM183AQ8IXX5 376 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 PUSL1Q8N0Z8 303 aaKnown RBP1.79□□□□□ -2.12
CD44-238ENST00000534296 PDIK1LQ8N165 341 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 FAM81AQ8TBF8 368 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 SLC22A8Q8TCC7 542 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 NT5C3BQ969T7 300 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 ASB9Q96DX5 294 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 BMFQ96LC9 184 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 ZNF578Q96N58 590 aaPredicted RBP1.79□□□□□ -2.12
CD44-238ENST00000534296 TSSK3Q96PN8 268 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 MTMR9Q96QG7 549 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 P2RX4Q99571 388 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 CCDC77Q9BR77 488 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 GABARAPL3Q9BY60 117 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 NXF3Q9H4D5 531 aaKnown RBP1.79□□□□□ -2.12
CD44-238ENST00000534296 METTL7AQ9H8H3 244 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 LY9Q9HBG7 655 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 CYTL1Q9NRR1 136 aa1.79□□□□□ -2.12
CD44-238ENST00000534296 UXTQ9UBK9 157 aaPredicted RBP1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms