RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	SKA3	Q8IX90	412 aa		13.44	□□□□□ -0.26
LMNA-223	ENST00000515459	BBS10	Q8TAM1	723 aa		13.44	□□□□□ -0.26
LMNA-223	ENST00000515459	RNF217	Q8TC41	542 aa		13.44	□□□□□ -0.26
LMNA-223	ENST00000515459	SLC47A1	Q96FL8	570 aa		13.44	□□□□□ -0.26
LMNA-223	ENST00000515459	ITCH	Q96J02	903 aa		13.44	□□□□□ -0.26
LMNA-223	ENST00000515459	WDR55	Q9H6Y2	383 aa	Predicted RBP	13.44	□□□□□ -0.26
LMNA-223	ENST00000515459	NTN4	Q9HB63	628 aa		13.44	□□□□□ -0.26
LMNA-223	ENST00000515459	MRPL39	Q9NYK5	338 aa	Known RBP	13.44	□□□□□ -0.26
LMNA-223	ENST00000515459	NKIRAS2	Q9NYR9	191 aa		13.44	□□□□□ -0.26
LMNA-223	ENST00000515459	WNK2	Q9Y3S1	2297 aa		13.44	□□□□□ -0.26
LMNA-223	ENST00000515459	IGLV3-9	A0A075B6K5	115 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	IGHV1-69-2	A0A0G2JMI3	117 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	C5orf58	C9J3I9	102 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	CLPTM1	O96005	669 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	IGHV2-5	P01817	119 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	BGLAP	P02818	100 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	NUDT7	P0C024	238 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	PATE4	P0C8F1	98 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	IDO1	P14902	403 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	ETS2	P15036	469 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	ZNF250	P15622	560 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	FPR2	P25090	351 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	PRKAR1B	P31321	381 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	RAD52	P43351	418 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	CSNK1A1	P48729	337 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	ZP4	Q12836	540 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	RGN	Q15493	299 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	C6orf10	Q5SRN2	563 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	MSANTD1	Q6ZTZ1	278 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	PXK	Q7Z7A4	578 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	WDFY1	Q8IWB7	410 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	MIER2	Q8N344	545 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	SLC30A7	Q8NEW0	376 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	FGFBP3	Q8TAT2	258 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	SYNPR	Q8TBG9	265 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	MAL2	Q969L2	176 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	TSPAN32	Q96QS1	320 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	C7orf69	Q9H7B7	122 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	SSU72	Q9NP77	194 aa	Known RBP	13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	A4GALT	Q9NPC4	353 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	SLCO1C1	Q9NYB5	712 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	SELENON	Q9NZV5	590 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	WIPI2	Q9Y4P8	454 aa		13.43	□□□□□ -0.26
LMNA-223	ENST00000515459	PKD1L1	Q8TDX9	2849 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	TRPC5OS	A6NMA1	111 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	CLDN25	C9JDP6	229 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	TPD52L2	O43399	206 aa	Known RBP	13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	ENTPD5	O75356	428 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	SERPINI2	O75830	405 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	PRSS23	O95084	383 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	LCK	P06239	509 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	OR8G3P	P0DMU2	310 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	HKR1	P10072	659 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	AHCY	P23526	432 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	NCALD	P61601	193 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	RBBP4	Q09028	425 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	BST1	Q10588	318 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	FADD	Q13158	208 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	HFE	Q30201	348 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	PDLIM3	Q53GG5	364 aa	Predicted RBP	13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	USP51	Q70EK9	711 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	SLC22A24	Q8N4F4	322 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	C10orf53	Q8N6V4	93 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	ZNF519	Q8TB69	540 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	C22orf15	Q8WYQ4	148 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	C11orf40	Q8WZ69	217 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	RAB1C	Q92928	201 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	TIMD4	Q96H15	378 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	MOGAT1	Q96PD6	335 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	TMEM109	Q9BVC6	243 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	OR51B6	Q9H340	312 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	RAD21L1	Q9H4I0	556 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	CDH20	Q9HBT6	801 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	DECR2	Q9NUI1	292 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	PPIAL4A	Q9Y536	164 aa		13.42	□□□□□ -0.26
LMNA-223	ENST00000515459	CLIC1	O00299	241 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	PLPP3	O14495	311 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	HDAC3	O15379	428 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	BMP2	P12643	396 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	CCL2	P13500	99 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	BID	P55957	195 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	NXN	Q6DKJ4	435 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	RBMS3	Q6XE24	437 aa	Known RBP	13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	RETREG3	Q86VR2	466 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	COMTD1	Q86VU5	262 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	TREML1	Q86YW5	311 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	PAQR4	Q8N4S7	273 aa	Predicted RBP	13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	RSPO3	Q9BXY4	272 aa	Predicted RBP	13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	C1orf198	Q9H425	327 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	TMEM27	Q9HBJ8	222 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	ZIM2	Q9NZV7	527 aa		13.41	□□□□□ -0.26
LMNA-223	ENST00000515459	TES	Q9UGI8	421 aa	Known RBP	13.41	□□□□□ -0.26
LMNA-223	ENST00000515459		A0A0B4J2E0	115 aa		13.4	□□□□□ -0.26
LMNA-223	ENST00000515459		A0A1B0GX12	115 aa		13.4	□□□□□ -0.26
LMNA-223	ENST00000515459	LRRN3	E7EW58	273 aa		13.4	□□□□□ -0.26
LMNA-223	ENST00000515459	RGS16	O15492	202 aa	Predicted RBP	13.4	□□□□□ -0.26
LMNA-223	ENST00000515459	FARS2	O95363	451 aa	Known RBP	13.4	□□□□□ -0.26
LMNA-223	ENST00000515459	SNAP29	O95721	258 aa		13.4	□□□□□ -0.26
LMNA-223	ENST00000515459	FSHB	P01225	129 aa		13.4	□□□□□ -0.26
LMNA-223	ENST00000515459	MT-ND5	P03915	603 aa		13.4	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms