RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 TMEM54Q969K7 222 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 LRR1Q96L50 414 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 PRRC1Q96M27 445 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 SH3GL3Q99963 347 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 FNDC11Q9BVV2 318 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 SLC19A3Q9BZV2 496 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 B3GAT2Q9NPZ5 323 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 MAN2C1Q9NTJ4 1040 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 GLTPQ9NZD2 209 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 AP3M1Q9Y2T2 418 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 ARL2BPQ9Y2Y0 163 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 MED31Q9Y3C7 131 aa9.99□□□□□ -0.81
VCAN-212ENST00000515397 TRAV27A0A087WT01 109 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 A0A087WUU8 490 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 MCIDASD6RGH6 385 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 RNF223E7ERA6 249 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 QDPRP09417 244 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 PRDX6P30041 224 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 RBM34P42696 430 aaKnown RBP9.98□□□□□ -0.81
VCAN-212ENST00000515397 SH3BGRP55822 239 aaPredicted RBP9.98□□□□□ -0.81
VCAN-212ENST00000515397 ST3GAL3Q11203 375 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 C11orf71Q6IPW1 123 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 SKA3Q8IX90 412 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 NRMQ8IXM6 262 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 CLDN22Q8N7P3 220 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 MAGEE2Q8TD90 523 aaPredicted RBP9.98□□□□□ -0.81
VCAN-212ENST00000515397 GEMIN6Q8WXD5 167 aaKnown RBP9.98□□□□□ -0.81
VCAN-212ENST00000515397 ZNF566Q969W8 418 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 BPIFA2Q96DR5 249 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 BOD1Q96IK1 185 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 HS6ST2Q96MM7 605 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 TNFRSF13CQ96RJ3 184 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 CCT8L2Q96SF2 557 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 CDRT15Q96T59 188 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 FOXB1Q99853 325 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 KCNS3Q9BQ31 491 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 BDH2Q9BUT1 245 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 OBP2BQ9NPH6 170 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 INIPQ9NRY2 104 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 CBLN4Q9NTU7 201 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 FAIMQ9NVQ4 179 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 B3GNT2Q9NY97 397 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 ZNF224Q9NZL3 707 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 ABCD2Q9UBJ2 740 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 TAGLN3Q9UI15 199 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 ABCA2Q9BZC7 2435 aa9.98□□□□□ -0.81
VCAN-212ENST00000515397 SONP18583 2426 aaKnown RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 IGKV1D-43A0A0B4J1Z2 117 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 IGHV2OR16-5A0A0B4J2B6 119 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 A0A1W2PRG6 482 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 hCG_2039718K7EN88 272 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 DHHO43323 396 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 TRMUO75648 421 aaKnown RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 PRSS23O95084 383 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 SLC2A10O95528 541 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 IGKV3-15P01624 115 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 IGLV1-44P01699 117 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 CRYAAP02489 173 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 PGA4P0DJD7 388 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 PGA3P0DJD8 388 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 SAGP10523 405 aaPredicted RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 FOSL1P15407 271 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 APOBEC3AP31941 199 aaPredicted RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 CDAP32320 146 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 THBS4P35443 961 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 GPR4P46093 362 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 GIPRP48546 466 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 PTDSS1P48651 473 aaKnown RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 CLRN1P58418 232 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 RAB1AP62820 205 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 FMODQ06828 376 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 RAB39AQ14964 217 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 TRAM2Q15035 370 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 RAB35Q15286 201 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 KRT80Q6KB66 452 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 ZNF730Q6ZMV8 503 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 ZCCHC24Q8N2G6 241 aaKnown RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 OR13C2Q8NGS9 318 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 OR52J3Q8NH60 311 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 ASB10Q8WXI3 467 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 NSMAFQ92636 917 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 MCHR2Q969V1 340 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 SLC25A44Q96H78 314 aaPredicted RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 COX4I2Q96KJ9 171 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 LRRC37BQ96QE4 947 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 POLR2J2Q9GZM3 115 aaKnown RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 POLR2J3Q9H1A7 115 aaKnown RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 NMNAT1Q9HAN9 279 aaPredicted RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 SPAG4Q9NPE6 437 aa9.97□□□□□ -0.81
VCAN-212ENST00000515397 CRNNQ9UBG3 495 aaPredicted RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 ZNF346Q9UL40 294 aaKnown RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 FN1P02751 2386 aaKnown RBP9.97□□□□□ -0.81
VCAN-212ENST00000515397 JMJD1CQ15652 2540 aa9.96□□□□□ -0.81
VCAN-212ENST00000515397 SH3PXD2BA1X283 911 aa9.96□□□□□ -0.82
VCAN-212ENST00000515397 CDC42EP2O14613 210 aa9.96□□□□□ -0.82
VCAN-212ENST00000515397 IGHG1P01857 330 aa9.96□□□□□ -0.82
VCAN-212ENST00000515397 OR4A8P0C604 315 aa9.96□□□□□ -0.82
VCAN-212ENST00000515397 THRBP10828 461 aa9.96□□□□□ -0.82
VCAN-212ENST00000515397 CCL2P13500 99 aa9.96□□□□□ -0.82
VCAN-212ENST00000515397 HOXB1P14653 301 aaPredicted RBP9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms