RNA–Protein interactions for RNA: ENST00000504788.5

LMNB1-208, Transcript of lamin B1, human

TSL 2

Gene LMNB1, Length 1,801 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNB1-208	ENST00000504788	UGT2A1	Q9Y4X1	527 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	PKDREJ	Q9NTG1	2253 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	APC	P25054	2843 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	ABCA4	P78363	2273 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	IGLV1-36	A0A0B4J1U3	117 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SLC22A23	A1A5C7	686 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	OR6C68	A6NDL8	312 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	CENPBD1	B2RD01	187 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	GPR171	O14626	319 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	MSTN	O14793	375 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SLC16A6	O15403	523 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	RNF13	O43567	381 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	TRMU	O75648	421 aa	Known RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SYNGR4	O95473	234 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SLC2A10	O95528	541 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SNAP29	O95721	258 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	CLDN1	O95832	211 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SCG5	P05408	212 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	PSKH1	P11801	424 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	HIST1H1C	P16403	213 aa	Known RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	CTLA4	P16410	223 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	ZNF43	P17038	809 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	GSTM3	P21266	225 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	BMP5	P22003	454 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SLC2A5	P22732	501 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	IGHV1-2	P23083	117 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	NOS3	P29474	1203 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	CHRNB4	P30926	498 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	CRISP1	P54107	249 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	BID	P55957	195 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	CLDN17	P56750	224 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	CTXN1	P60606	82 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	RPL27	P61353	136 aa	Known RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	ESRRG	P62508	458 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	ERVK-25	P63136	954 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	ADARB1	P78563	741 aa	Known RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SLC34A1	Q06495	639 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	FMOD	Q06828	376 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SF3B4	Q15427	424 aa	Known RBP eCLIP	4.35	□□□□□ -1.71	1e-9	■■■■□ 23.6
LMNB1-208	ENST00000504788	LINC01590	Q5TEZ4	76 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SLX4IP	Q5VYV7	408 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	TMEM236	Q5W0B7	351 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	FBXW9	Q5XUX1	488 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	TMEM211	Q6ICI0	200 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	LAIR2	Q6ISS4	152 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SLC25A47	Q6Q0C1	308 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	STAC2	Q6ZMT1	411 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788		Q6ZT83	130 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	USP51	Q70EK9	711 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	ZNF771	Q7L3S4	317 aa	Predicted RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	GALNT5	Q7Z7M9	940 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	MRGPRG	Q86SM5	289 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	GPAT4	Q86UL3	456 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	UEVLD	Q8IX04	471 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	IQCF1	Q8N6M8	205 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	ICA1L	Q8NDH6	482 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	FANK1	Q8TC84	345 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	MAGEE2	Q8TD90	523 aa	Predicted RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	DNAJC9	Q8WXX5	260 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	UBE2F	Q969M7	185 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	HRASLS5	Q96KN8	279 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	PSMG3-AS1	Q96PY0	264 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	ALKBH3	Q96Q83	286 aa	Predicted RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SNX18	Q96RF0	628 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	NAA11	Q9BSU3	229 aa	Predicted RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	OPN3	Q9H1Y3	402 aa	Predicted RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	SLCO5A1	Q9H2Y9	848 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	PAPOLB	Q9NRJ5	636 aa	Known RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	INIP	Q9NRY2	104 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	VSX1	Q9NZR4	365 aa	Predicted RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	NDRG4	Q9ULP0	352 aa	Known RBP	4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	POFUT2	Q9Y2G5	429 aa		4.35	□□□□□ -1.71
LMNB1-208	ENST00000504788	PLCE1	Q9P212	2302 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	UNC79	Q9P2D8	2635 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	PDZD2	O15018	2839 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	TEX13C	A0A0J9YWL9	993 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	PRSS37	A4D1T9	235 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	NKX2-6	A6NCS4	301 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	GNGT2	O14610	69 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	SURF4	O15260	269 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	SIAH2	O43255	324 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	PRKY	O43930	277 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	E2F6	O75461	281 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	PPP1R3D	O95685	299 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	IGHV3-9	P01782	118 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	THBD	P07204	575 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	GAA	P10253	952 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	ACADS	P16219	412 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	PSMB1	P20618	241 aa	Known RBP	4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	AHCY	P23526	432 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	LOX	P28300	417 aa	Predicted RBP	4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	IFNGR2	P38484	337 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	FAM27E3	Q08E93	113 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	NPRL3	Q12980	569 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	CAMK2D	Q13557	499 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	TAF11	Q15544	211 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	STK11	Q15831	433 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	ETFDH	Q16134	617 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	GABRA6	Q16445	453 aa		4.34	□□□□□ -1.71
LMNB1-208	ENST00000504788	PGGHG	Q32M88	737 aa		4.34	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms