RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ZNF250P15622 560 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 GATA3P23771 443 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 HTR2AP28223 471 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 SLC1A6P48664 564 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 KLF3P57682 345 aaPredicted RBP11.88□□□□□ -0.51
VARS-227ENST00000489979 ERVS71-1P61550 626 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 GTDC1Q4AE62 458 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 MIDNQ504T8 468 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 NHLRC1Q6VVB1 395 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 RBMS3Q6XE24 437 aaKnown RBP11.88□□□□□ -0.51
VARS-227ENST00000489979 USP51Q70EK9 711 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 SLC30A7Q8NEW0 376 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 GTF3AQ92664 365 aaKnown RBP11.88□□□□□ -0.51
VARS-227ENST00000489979 SLC35B4Q969S0 331 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 LRRC58Q96CX6 371 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 SLC41A3Q96GZ6 507 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 TIMD4Q96H15 378 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 DECR2Q9NUI1 292 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 PNPOQ9NVS9 261 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 SLCO1C1Q9NYB5 712 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 NKIRAS2Q9NYR9 191 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 GPR45Q9Y5Y3 372 aa11.88□□□□□ -0.51
VARS-227ENST00000489979 SLC22A23A1A5C7 686 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 TPD52L2O43399 206 aaKnown RBP11.87□□□□□ -0.51
VARS-227ENST00000489979 SERPINI2O75830 405 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 ANP32DO95626 131 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 BGLAPP02818 100 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 LCKP06239 509 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 NUDT7P0C024 238 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 CCL2P13500 99 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 PRTN3P24158 256 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 CSNK1A1P48729 337 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 LCN2P80188 198 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 PUDPQ08623 228 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 RBBP4Q09028 425 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 IFFO1Q0D2I5 559 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 PMS2P3Q13401 168 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 TSTQ16762 297 aaKnown RBP11.87□□□□□ -0.51
VARS-227ENST00000489979 ALG10BQ5I7T1 473 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 RETREG3Q86VR2 466 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 LRRC17Q8N6Y2 441 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 LSMEM1Q8N8F7 131 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 SCAIQ8N9R8 606 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 DNAJA4Q8WW22 397 aaPredicted RBP11.87□□□□□ -0.51
VARS-227ENST00000489979 RAB1CQ92928 201 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 TRIM44Q96DX7 344 aaPredicted RBP11.87□□□□□ -0.51
VARS-227ENST00000489979 GAL3ST1Q99999 423 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 ASPNQ9BXN1 380 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 CDH20Q9HBT6 801 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 BCL2L10Q9HD36 194 aa11.87□□□□□ -0.51
VARS-227ENST00000489979 THUMPD1Q9NXG2 353 aaKnown RBP11.87□□□□□ -0.51
VARS-227ENST00000489979 A0A0G2JK05 382 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 DNAJC9-AS1A6NH13 148 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 SDHDO14521 159 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 ZNF500O60304 480 aaPredicted RBP11.86□□□□□ -0.51
VARS-227ENST00000489979 AHCYP23526 432 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 GLO1Q04760 184 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 TUSC1Q2TAM9 212 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 HFEQ30201 348 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 PDCD4Q53EL6 469 aaKnown RBP11.86□□□□□ -0.51
VARS-227ENST00000489979 DOK3Q7L591 496 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 PIWIL3Q7Z3Z3 882 aaKnown RBP11.86□□□□□ -0.51
VARS-227ENST00000489979 PXKQ7Z7A4 578 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 TREML1Q86YW5 311 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 SLC22A24Q8N4F4 322 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 GLB1L3Q8NCI6 653 aaPredicted RBP11.86□□□□□ -0.51
VARS-227ENST00000489979 ICA1LQ8NDH6 482 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 OR6S1Q8NH40 331 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 ZNF519Q8TB69 540 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 C11orf40Q8WZ69 217 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 MAL2Q969L2 176 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 VPS33AQ96AX1 596 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 MOGAT1Q96PD6 335 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 EPYCQ99645 322 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 RSPO3Q9BXY4 272 aaPredicted RBP11.86□□□□□ -0.51
VARS-227ENST00000489979 SAP30LQ9HAJ7 183 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 MRPL39Q9NYK5 338 aaKnown RBP11.86□□□□□ -0.51
VARS-227ENST00000489979 HAO1Q9UJM8 370 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 VWFP04275 2813 aa11.86□□□□□ -0.51
VARS-227ENST00000489979 LRRN3E7EW58 273 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 PLPP3O14495 311 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 BIRC5O15392 142 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 IL6P05231 212 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 ZCCHC18P0CG32 403 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 OR8G3PP0DMU2 310 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 MAKP20794 623 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 BGNP21810 368 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 ZFP36P26651 326 aaKnown RBP11.85□□□□□ -0.51
VARS-227ENST00000489979 BIDP55957 195 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 FAM91A1Q658Y4 838 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 ULK3Q6PHR2 472 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 WDR88Q6ZMY6 472 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 COMTD1Q86VU5 262 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 KIRREL3Q8IZU9 778 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 C10orf53Q8N6V4 93 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 BBS10Q8TAM1 723 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 CCL17Q92583 94 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 TMEM54Q969K7 222 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 ELMOD3Q96FG2 381 aa11.85□□□□□ -0.51
VARS-227ENST00000489979 SLC47A1Q96FL8 570 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms