RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PLET1Q6UQ28 207 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 CD164L2Q6UWJ8 174 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 ZCCHC23Q6ZST2 131 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 CATSPER4Q7RTX7 472 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 SYVN1Q86TM6 617 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 TMEM135Q86UB9 458 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 CBWD2Q8IUF1 395 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 CCDC71Q8IV32 467 aaPredicted RBP4.51□□□□□ -1.69
USP40-213ENST00000483216 ZBTB8OSQ8IWT0 167 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 SAMD12Q8N8I0 201 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 DNAAF3Q8N9W5 541 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 C19orf18Q8NEA5 215 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 OR10Z1Q8NGY1 313 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 FLVCR1-AS1Q8TAF5 88 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 DYNC2LI1Q8TCX1 351 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 LRRC58Q96CX6 371 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 PDXPQ96GD0 296 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 Q96MT0 163 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 PSKH2Q96QS6 385 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 GPR22Q99680 433 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 SLC29A1Q99808 456 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 FAM213AQ9BRX8 229 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 NXF2Q9GZY0 626 aaKnown RBP4.51□□□□□ -1.69
USP40-213ENST00000483216 DPEP3Q9H4B8 488 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 TRIM45Q9H8W5 580 aaPredicted RBP4.51□□□□□ -1.69
USP40-213ENST00000483216 POPDC3Q9HBV1 291 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 ABCB10Q9NRK6 738 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 FAM212BQ9NTI7 297 aaPredicted RBP4.51□□□□□ -1.69
USP40-213ENST00000483216 TMEM216Q9P0N5 145 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 COPZ2Q9P299 210 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 CYB5R1Q9UHQ9 305 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 SAMD4AQ9UPU9 718 aaKnown RBP4.51□□□□□ -1.69
USP40-213ENST00000483216 TIMM22Q9Y584 194 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 ZFP37Q9Y6Q3 630 aaPredicted RBP4.51□□□□□ -1.69
USP40-213ENST00000483216 COL4A5P29400 1685 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 MYH11P35749 1972 aa4.51□□□□□ -1.69
USP40-213ENST00000483216 RBBP6Q7Z6E9 1792 aaKnown RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 IGLV3-22A0A075B6J6 115 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 A0A0J9YYE9 177 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 TMEM129A0AVI4 362 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 LINC00862A6NCI5 91 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 KRT87PA6NCN2 255 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 PRORSD1PA6NEY8 169 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 CCRL2O00421 344 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 DLGAP1O14490 977 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 BCKDKO14874 412 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 SLC16A4O15374 487 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 CHMP2AO43633 222 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 HCN1O60741 890 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 VPS26AO75436 327 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 LYPLA1O75608 230 aaPredicted RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 ZMPSTE24O75844 475 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 ECDO95905 644 aaPredicted RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 FTH1P02794 183 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 KRTAP1-4P0C5Y4 121 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 RAB3AP20336 220 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 CD9P21926 228 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 GPX3P22352 226 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 PSMB9P28065 219 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 CBX5P45973 191 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 RORCP51449 518 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 PSMD4P55036 377 aaKnown RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 AP1S2P56377 157 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 LRRC74AQ0VAA2 488 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 C1DQ13901 141 aaKnown RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 MXD4Q14582 209 aaPredicted RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 DPYSL2Q16555 572 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 Q1RN00 199 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 ZNF699Q32M78 642 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 GPAT3Q53EU6 434 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 C1orf220Q5T0J3 134 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 ATAD3CQ5T2N8 411 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 ZNF691Q5VV52 312 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 UBE2UQ5VVX9 321 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 KCTD11Q693B1 232 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 XAF1Q6GPH4 301 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 HSDL2Q6YN16 418 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 PGAP1Q75T13 922 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 STRADAQ7RTN6 431 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 PIWIL3Q7Z3Z3 882 aaKnown RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 SERINC5Q86VE9 423 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 CCNYL1Q8N7R7 359 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 FNDC5Q8NAU1 212 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 ZNF540Q8NDQ6 660 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 WDR36Q8NI36 951 aaKnown RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 SPPL2BQ8TCT7 592 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 MRPL24Q96A35 216 aaKnown RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 ESAMQ96AP7 390 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 NTNG2Q96CW9 530 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 ZBED3Q96IU2 234 aaPredicted RBP4.5□□□□□ -1.69
USP40-213ENST00000483216 PPP3R2Q96LZ3 170 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 RNF145Q96MT1 663 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 OR52B2Q96RD2 323 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 NPAS2Q99743 824 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 ACTR6Q9GZN1 396 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 DCSTAMPQ9H295 470 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 DUSP21Q9H596 190 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 CISHQ9NSE2 258 aa4.5□□□□□ -1.69
USP40-213ENST00000483216 NRBP2Q9NSY0 501 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms