RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TMEM176BQ3YBM2 270 aaPredicted RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 HEPHL1Q6MZM0 1159 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 H1FNTQ75WM6 255 aaPredicted RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 ZNF565Q8N9K5 539 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 METTL17Q9H7H0 456 aaPredicted RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 UBE2ZQ9H832 354 aaPredicted RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 EMC9Q9Y3B6 208 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 BOLA1Q9Y3E2 137 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 PIKFYVEQ9Y2I7 2098 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 OR2W5A6NFC9 320 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 PRKNO60260 465 aaPredicted RBP13.36□□□□□ -0.27
HDAC6-220ENST00000477528 RAD51DO75771 328 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 CD63P08962 238 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 TMEM225BP0DP42 221 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 ZNF28P17035 718 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 EPHA4P54764 986 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 BIDP55957 195 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 IL10RAQ13651 578 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 ALKBH2Q6NS38 261 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 OR51D1Q8NGF3 324 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 ZNF681Q96N22 645 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 SFXN2Q96NB2 322 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 ZSCAN5BA6NJL1 495 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 EEF1E1-BLOC1S5C9J1V9 151 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 GABARAPH6UMI1 98 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 CDC42EP2O14613 210 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 LSSP48449 732 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 CD276Q5ZPR3 534 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 PRSS45Q7RTY3 260 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 OR51T1Q8NGJ9 327 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 DCBLD2Q96PD2 775 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 FYTTD1Q96QD9 318 aaKnown RBP13.36□□□□□ -0.27
HDAC6-220ENST00000477528 CES1P1Q9UKY3 287 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 NINQ8N4C6 2090 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 TRAV1-2A0A0B4J238 106 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 IGHV3-20A0A0C4DH32 117 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 AIPO00170 330 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 EML2O95834 649 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 PEBP1P30086 187 aaKnown RBP13.36□□□□□ -0.27
HDAC6-220ENST00000477528 APOBEC1P41238 236 aaKnown RBP13.36□□□□□ -0.27
HDAC6-220ENST00000477528 CXADRP78310 365 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 ACKR1Q16570 336 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 PDZD9Q8IXQ8 264 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 FAM3DQ96BQ1 224 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 ULBP3Q9BZM4 244 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 PLEK2Q9NYT0 353 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 EMC3Q9P0I2 261 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 NSG1A0A0A6YYJ2 146 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 HRO43593 1189 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 PLATP00750 562 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 BDKRB2P30411 391 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 PNLIPRP2P54317 469 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 TAS2R31P59538 309 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 RSU1Q15404 277 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 SPIN3Q5JUX0 258 aa13.36□□□□□ -0.27
HDAC6-220ENST00000477528 C12orf45Q8N5I9 185 aaPredicted RBP13.36□□□□□ -0.27
HDAC6-220ENST00000477528 PCYT1BQ9Y5K3 369 aaPredicted RBP13.36□□□□□ -0.27
HDAC6-220ENST00000477528 PRAMEF25A6NGN4 478 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 CER1O95813 267 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 UBCP0CG48 685 aaKnown RBP13.35□□□□□ -0.27
HDAC6-220ENST00000477528 ATF4P18848 351 aaPredicted RBP13.35□□□□□ -0.27
HDAC6-220ENST00000477528 AIMP2Q13155 320 aaKnown RBP13.35□□□□□ -0.27
HDAC6-220ENST00000477528 SELENBP1Q13228 472 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 SMAD2Q15796 467 aaKnown RBP13.35□□□□□ -0.27
HDAC6-220ENST00000477528 COMMD7Q86VX2 200 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 KMT5CQ86Y97 462 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 OR5T2Q8NGG2 359 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 TSSK2Q96PF2 358 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 C20orf85Q9H1P6 137 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 CHRNA9Q9UGM1 479 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 IGKV1-8A0A0C4DH67 115 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 LOC100289279A0A1B0GTE1 492 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 NRG2O14511 850 aaPredicted RBP13.35□□□□□ -0.27
HDAC6-220ENST00000477528 SFTPBP07988 381 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 CT62P0C5K7 136 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 PVALBP20472 110 aaPredicted RBP13.35□□□□□ -0.27
HDAC6-220ENST00000477528 VEGFCP49767 419 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 VAMP2P63027 116 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 DGCR2P98153 550 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 EGR3Q06889 387 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 SF3B4Q15427 424 aaKnown RBP eCLIP13.35□□□□□ -0.274e-7■■■■□ 22.9
HDAC6-220ENST00000477528 ABI3BPQ7Z7G0 1075 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 LINC00346Q8IVM7 164 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 ACBD4Q8NC06 268 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 OR6M1Q8NGM8 313 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 CCDC74AQ96AQ1 378 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 CCDC120Q96HB5 630 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 CTRCQ99895 268 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 COA3Q9Y2R0 106 aaPredicted RBP13.35□□□□□ -0.27
HDAC6-220ENST00000477528 HSPB2A8KAH6 182 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 TNFRSF10AO00220 468 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 RBMXL2O75526 392 aaKnown RBP13.35□□□□□ -0.27
HDAC6-220ENST00000477528 CBX7O95931 251 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 C1QBP02746 253 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 EIF1P41567 113 aaKnown RBP13.35□□□□□ -0.27
HDAC6-220ENST00000477528 CLDN20P56880 219 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 CAMK2DQ13557 499 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 HSPB2Q16082 182 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 PRSS53Q2L4Q9 553 aa13.35□□□□□ -0.27
HDAC6-220ENST00000477528 FAM27D1Q5T7N8 215 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms