RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CLDN15P56746 228 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 VAMP2P63027 116 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 BORAQ6PGQ7 559 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 VHLLQ6RSH7 139 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 C3P1Q6ZMU1 363 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SLC15A4Q8N697 577 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 OR9K2Q8NGE7 335 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 OR2Y1Q8NGV0 311 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 OR52N1Q8NH53 320 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 STK35Q8TDR2 534 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SLC22A11Q9NSA0 550 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 MED29Q9NX70 200 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 TAS2R8Q9NYW2 309 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 CYR61O00622 381 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 TNFSF11O14788 317 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SCGB1D2O95969 90 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SERPINA5P05154 406 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 NAGAP17050 411 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 TEKQ02763 1124 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 ALKBH1Q13686 389 aaKnown RBP6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SPCS2Q15005 226 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 NTRK2Q16620 822 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SWI5Q1ZZU3 235 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 TMEM205Q6UW68 189 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 TPRA1Q86W33 373 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 IQCF2Q8IXL9 164 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SYNPRQ8TBG9 265 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 ZFAND2BQ8WV99 257 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 TMEM106AQ96A25 262 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 OXGR1Q96P68 337 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 PAQR5Q9NXK6 330 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-213ENST00000448038 ETAA1Q9NY74 926 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 RABL2AQ9UBK7 228 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-213ENST00000448038 RABL2BQ9UNT1 228 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 HDGFL3Q9Y3E1 203 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 A0A087WUJ7 227 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 IGHV3-15A0A0B4J1V0 119 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 DBHP09172 617 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 RBMXP38159 391 aaKnown RBP6.74□□□□□ -1.33
SYNE1-213ENST00000448038 AP2S1P53680 142 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-213ENST00000448038 ATP1B3P54709 279 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF117Q03924 483 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 CTU2Q2VPK5 515 aaKnown RBP6.74□□□□□ -1.33
SYNE1-213ENST00000448038 GDPD1Q8N9F7 314 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 PLPP5Q8NEB5 264 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 GPR32P1Q8NGA4 272 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 OR1J2Q8NGS2 313 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 C7orf34Q96L11 122 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 PLEKHJ1Q9NW61 149 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 KCNIP1Q9NZI2 227 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 DNAJB11Q9UBS4 358 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 KCNIP3Q9Y2W7 256 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF646O15015 1829 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-213ENST00000448038 ZNF891A8MT65 544 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-213ENST00000448038 DIRAS3O95661 229 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 ERGP11308 486 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 ANXA3P12429 323 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SPI1P17947 270 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 UGT2B10P36537 528 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 CAV3P56539 151 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 VASH2Q86V25 355 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 OR13C9Q8NGT0 318 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 ABHD4Q8TB40 342 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 NTN4Q9HB63 628 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 HRH3Q9Y5N1 445 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 IGKV1-8A0A0C4DH67 115 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SHISA8B8ZZ34 492 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 P2RY10O00398 339 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 EBPQ15125 230 aaKnown RBP6.74□□□□□ -1.33
SYNE1-213ENST00000448038 MKXQ8IYA7 352 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 MFSD8Q8NHS3 518 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 MIB2Q96AX9 1013 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 C10orf90Q96M02 699 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 GNRHR2Q96P88 292 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 TRIB1Q96RU8 372 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 FAM173AQ9BQD7 235 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 DNTTIP1Q9H147 329 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 SLC25A19Q9HC21 320 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 EMC7Q9NPA0 242 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 GPR160Q9UJ42 338 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 TCFL5Q9UL49 500 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 KLK4Q9Y5K2 254 aa6.74□□□□□ -1.33
SYNE1-213ENST00000448038 TEX51A0A1B0GUA7 166 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 HPGDSO60760 199 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 SERPINA7P05543 415 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 GSTT2P0CG29 244 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 EPHA2P29317 976 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 MAP2K6P52564 334 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 PSMA6P60900 246 aaKnown RBP6.73□□□□□ -1.33
SYNE1-213ENST00000448038 MZT1Q08AG7 82 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 Q499Y3 187 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 SLC46A3Q7Z3Q1 461 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 IL17RDQ8NFM7 739 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 GPR119Q8TDV5 335 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 ADAMTS14Q8WXS8 1223 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 CACNG6Q9BXT2 260 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 TXNIPQ9H3M7 391 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 TRAV17A0A0B4J275 112 aa6.73□□□□□ -1.33
SYNE1-213ENST00000448038 A0A0B4J2E0 115 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms