RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 C6orf226Q5I0X4 101 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 CASC10Q5T4H9 136 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 LCN12Q6JVE5 192 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 ZNF530Q6P9A1 599 aaPredicted RBP2.33□□□□□ -2.04
VPS41-207ENST00000439468 LRRC31Q6UY01 552 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 NBPF5PQ86XG9 351 aaPredicted RBP2.33□□□□□ -2.04
VPS41-207ENST00000439468 NUDCD3Q8IVD9 361 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 FAM83FQ8NEG4 500 aaPredicted RBP2.33□□□□□ -2.04
VPS41-207ENST00000439468 TMEM158Q8WZ71 300 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 NDRG1Q92597 394 aaKnown RBP2.33□□□□□ -2.04
VPS41-207ENST00000439468 PLEKHA8Q96JA3 519 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 FCRL1Q96LA6 429 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 PELOQ9BRX2 385 aaKnown RBP2.33□□□□□ -2.04
VPS41-207ENST00000439468 CHRDL1Q9BU40 450 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 ASB8Q9H765 288 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 NANOGQ9H9S0 305 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 MMP26Q9NRE1 261 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 ADAM22Q9P0K1 906 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 PISDQ9UG56 409 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 TP53TG5Q9Y2B4 290 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 RRP15Q9Y3B9 282 aaKnown RBP2.33□□□□□ -2.04
VPS41-207ENST00000439468 NPTNQ9Y639 398 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 CACNG2Q9Y698 323 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 THSD7AQ9UPZ6 1657 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 NRAPQ86VF7 1730 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 NALCNQ8IZF0 1738 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 NWD2Q9ULI1 1742 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 NLRP1Q9C000 1473 aa2.33□□□□□ -2.04
VPS41-207ENST00000439468 SLIT1O75093 1534 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 UNC80Q8N2C7 3258 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 A0A1W2PPE3 182 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 WI2-2373I1.2A0A1W2PRP0 233 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 GOLGA8SH3BPF8 625 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 INSP01308 110 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 ICAM2P13598 275 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 MGMTP16455 207 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 NCF2P19878 526 aaPredicted RBP2.32□□□□□ -2.04
VPS41-207ENST00000439468 GLP1RP43220 463 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 ZNF133P52736 654 aaPredicted RBP2.32□□□□□ -2.04
VPS41-207ENST00000439468 ACTR3P61158 418 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 CTSL3PQ5NE16 218 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 PRAMEF5Q5TYX0 476 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 PRAMEF6Q5VXH4 476 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 IGFL2Q6UWQ7 119 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 KDM7AQ6ZMT4 941 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 UTS2BQ765I0 119 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 UBE2J2Q8N2K1 259 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 ZNF433Q8N7K0 673 aaPredicted RBP2.32□□□□□ -2.04
VPS41-207ENST00000439468 FNDC5Q8NAU1 212 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 AKR7LQ8NHP1 331 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 N4BP2L2Q92802 583 aaPredicted RBP2.32□□□□□ -2.04
VPS41-207ENST00000439468 ELSPBP1Q96BH3 223 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 TUBGCP3Q96CW5 907 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 TM4SF19Q96DZ7 209 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 TMEM246Q9BRR3 403 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 ROGDIQ9GZN7 287 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 GBA3Q9H227 469 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 CLMPQ9H6B4 373 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 SIAEQ9HAT2 523 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 ADAP2Q9NPF8 381 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 CCL28Q9NRJ3 127 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 ETNK2Q9NVF9 386 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 CALYQ9NYX4 217 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 MSH6P52701 1360 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 PZPP20742 1482 aa2.32□□□□□ -2.04
VPS41-207ENST00000439468 INO80Q9ULG1 1556 aaPredicted RBP2.32□□□□□ -2.04
VPS41-207ENST00000439468 UBXN8O00124 270 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 UQCRFS1P1P0C7P4 283 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 SLC2A5P22732 501 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 CCNCP24863 283 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 PRDX3P30048 256 aaKnown RBP2.31□□□□□ -2.04
VPS41-207ENST00000439468 CASP14P31944 242 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 LHX2P50458 406 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 CCR6P51684 374 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 CDH4P55283 916 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 WNT4P56705 351 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 MRPL28Q13084 256 aaKnown RBP2.31□□□□□ -2.04
VPS41-207ENST00000439468 FZD2Q14332 565 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 KIAA0087Q14695 138 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 GPNMBQ14956 572 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 PSG5Q15238 335 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 DGUOKQ16854 277 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 CCDC183Q5T5S1 534 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 CNIH2Q6PI25 160 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 C6orf89Q6UWU4 347 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 H2BFWTQ7Z2G1 175 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 PSTKQ8IV42 348 aaKnown RBP2.31□□□□□ -2.04
VPS41-207ENST00000439468 PUSL1Q8N0Z8 303 aaKnown RBP2.31□□□□□ -2.04
VPS41-207ENST00000439468 OR4F6Q8NGB9 312 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 PYROXD1Q8WU10 500 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 RNF139Q8WU17 664 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 ACOT11Q8WXI4 607 aaPredicted RBP2.31□□□□□ -2.04
VPS41-207ENST00000439468 FGF14Q92915 247 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 SMARCD2Q92925 531 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 IL22RA2Q969J5 263 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 MED8Q96G25 268 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 OR8B4Q96RC9 309 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 MYCBPQ99417 103 aaPredicted RBP2.31□□□□□ -2.04
VPS41-207ENST00000439468 NRIP2Q9BQI9 281 aa2.31□□□□□ -2.04
VPS41-207ENST00000439468 TMEM59Q9BXS4 323 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms