RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 FAM156AQ8NDB6 213 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 RBM15BQ8NDT2 890 aaKnown RBP13.24□□□□□ -0.29
LIMS3-201ENST00000437679 ACOT11Q8WXI4 607 aaPredicted RBP13.24□□□□□ -0.29
LIMS3-201ENST00000437679 NANOS1Q8WY41 292 aaKnown RBP13.24□□□□□ -0.29
LIMS3-201ENST00000437679 Q96MF0 132 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 CDRT15Q96T59 188 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 FOXB1Q99853 325 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 GRIP2Q9C0E4 1043 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 GORASP2Q9H8Y8 452 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 MAN2C1Q9NTJ4 1040 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 CBLN4Q9NTU7 201 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 DCAF13Q9NV06 445 aaKnown RBP13.24□□□□□ -0.29
LIMS3-201ENST00000437679 STX18Q9P2W9 335 aaKnown RBP13.24□□□□□ -0.29
LIMS3-201ENST00000437679 MAGEL2Q9UJ55 1249 aa13.24□□□□□ -0.29
LIMS3-201ENST00000437679 ENTPD5O75356 428 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 PRSS23O95084 383 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 IGKV3-15P01624 115 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 IGLV1-44P01699 117 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 CD8AP01732 235 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 CECR9P0C854 216 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 PGA4P0DJD7 388 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 PGA3P0DJD8 388 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 SAGP10523 405 aaPredicted RBP13.23□□□□□ -0.29
LIMS3-201ENST00000437679 ARR3P36575 388 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 CDKN1AP38936 164 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 PRKCDQ05655 676 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF627Q7L945 461 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 MDP1Q86V88 176 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 DEFB107AQ8IZN7 70 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 CCDC197Q8NCU1 140 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 MOSPD2Q8NHP6 518 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 ASB10Q8WXI3 467 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 ANKRD19PQ9H560 264 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 DLL4Q9NR61 685 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 HIF3AQ9Y2N7 669 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 VPS13CQ709C8 3753 aa13.23□□□□□ -0.29
LIMS3-201ENST00000437679 EFCAB9A8MZ26 197 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 CENPBD1B2RD01 187 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 H1F0P07305 194 aaKnown RBP13.22□□□□□ -0.29
LIMS3-201ENST00000437679 TSPAN19P0C672 248 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 CD79AP11912 226 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 B4GALT1P15291 398 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 ACADSP16219 412 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 RHCEP18577 417 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 MAKP20794 623 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 FUT4P22083 530 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 APOBEC3AP31941 199 aaPredicted RBP13.22□□□□□ -0.29
LIMS3-201ENST00000437679 IDH3GP51553 393 aaPredicted RBP13.22□□□□□ -0.29
LIMS3-201ENST00000437679 LSM11P83369 360 aaKnown RBP eCLIP13.22□□□□□ -0.29
LIMS3-201ENST00000437679 NAAAQ02083 359 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 NPRL3Q12980 569 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 LAPTM4AQ15012 233 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 FXNQ16595 210 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 ANKDD1AQ495B1 522 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 SPATS1Q496A3 300 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 ALG10Q5BKT4 473 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 MBOAT2Q6ZWT7 520 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 PIWIL3Q7Z3Z3 882 aaKnown RBP13.22□□□□□ -0.29
LIMS3-201ENST00000437679 FITM2Q8N6M3 262 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 NOXO1Q8NFA2 376 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 NSL1Q96IY1 281 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 C18orf12Q96KH6 178 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 NSMCE2Q96MF7 247 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 BDH2Q9BUT1 245 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 NMNAT1Q9HAN9 279 aaPredicted RBP13.22□□□□□ -0.29
LIMS3-201ENST00000437679 NDUFAF4Q9P032 175 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 CD300AQ9UGN4 299 aa13.22□□□□□ -0.29
LIMS3-201ENST00000437679 A0A087WUU8 490 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF503-AS2A6NEH8 195 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 NPIPB13A6NJU9 1138 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 B2RBV5 119 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 NPIPB4C9JG80 1138 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 DHHO43323 396 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 TRMUO75648 421 aaKnown RBP13.21□□□□□ -0.29
LIMS3-201ENST00000437679 UBL3O95164 117 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 HLA-HP01893 362 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 QDPRP09417 244 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 BMP4P12644 408 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 ITGA2P17301 1181 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 MSX2P35548 267 aaPredicted RBP13.21□□□□□ -0.29
LIMS3-201ENST00000437679 SLC9A3P48764 834 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF84P51523 738 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 CHRNB3Q05901 458 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 TAF11Q15544 211 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 ETFDHQ16134 617 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 GSG1Q2KHT4 349 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 LRFN4Q6PJG9 635 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 TBPL2Q6SJ96 375 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 OAFQ86UD1 273 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 MEX3DQ86XN8 651 aaKnown RBP13.21□□□□□ -0.29
LIMS3-201ENST00000437679 SYT14Q8NB59 555 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 IL17RDQ8NFM7 739 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 OR4F15Q8NGB8 312 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 OR51A7Q8NH64 312 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 PYURFQ96I23 114 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 ZNF347Q96SE7 839 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 CACNG6Q9BXT2 260 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 TXNIPQ9H3M7 391 aa13.21□□□□□ -0.29
LIMS3-201ENST00000437679 BARX1Q9HBU1 254 aaPredicted RBP13.21□□□□□ -0.29
LIMS3-201ENST00000437679 TMEM5Q9Y2B1 443 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms